@rbatte1
Seems perfect, I'll try it later on.
Update you on the results later on.
Many thanks!
---------- Post updated 07-11-14 at 11:46 AM ---------- Previous update was 06-11-14 at 05:51 PM ----------
@rbatte1
It works! After some slight changes (in bold) because of my files names
Code:
find ./path/ -type f | sed -e 's/_R.*$//' -e 's/_R//'|sort -u | while read path_file # Or however you generate your file list
do
file="${path_file##*/}" # Get just the file bit, dropping the path
echo "command -1 ${path_file}_R1_val_1.fq.gz -2 ${path_file}_R2_val_2.fq.gz --un-conc-gz $file --several --others --parameters"
done
@gandolf989
Thanks for the suggestion, actually the command is already a perl wrapper.
That is away ahead for my state of knowledge, hope to get there some day...
This User Gave Thanks to sargotrons For This Post:
My program usage takes the form for example;
$ theApp 2 "one or more words"
i.e. 3 command line arguments; application name, an integer, some text
My code includes the following 4 lines:
int anInteger;
char words;
sscanf(argv, "%d", &anInteger);
sscanf(argv, "%s", &message);
Based... (2 Replies)
I am trying to print command line arguments one per second. I have this
while
do
echo "6"
shift
echo "5"
shift
echo "4"
shift
echo "3"
shift
echo "2"
shift
echo "1"
shift
done (2 Replies)
I have this while loop and at the end I am trying to get it to tell me the last argument I entered. And with it like this all I get is the sentence with no value for $1. Now I tried moving done after the sentence and it printed the value of $1 after every number. I don't want that I just want... (2 Replies)
Hi,
I have to store all the command line arguments into an array.
I have the following code.
**********************
#! /bin/sh
set -A arr_no_updates
i=1
while
do
arr_no_updates=$($i)
echo ${arr_no_updates}
i=$(($i+1))
done**************** (1 Reply)
I have this code, I thought it would automatically know the args sent to script when called from shell. But it seems to not see any...
main script:
. args
. errors
. opt
. clean
dbfile=""
opfile=""
# calls function in script below
chkarg
#check commands (2 Replies)
Hi,
i have a perl script named test.pl. It is executed as
cat *.log|test.pl
i need the complete command line args. I tried using basename $0 but im getting test.pl only but not cat *.log...
Can anyone help me on this.
Thanks in advance (3 Replies)
Hi,
Can you please hint me how to achieve the below?
Input:
$./script.sh start 1 2
Internally inside the script i want to set a single variable with $2 and $3 value?
Output:
CMD=$1
ARGS=$2 $3
--VInodh (10 Replies)
Store args passed in array but not the first 2 args.
# bash
declare -a arr=("$@")
s=$(IFS=, eval 'echo "${arr}"')
echo "$s"
output:
sh array.sh 1 2 3 4 5 6
1,2,3,4,5,6
Desired output:
sh array.sh 1 2 3 4 5 6
3,4,5,6 (2 Replies)
Discussion started by: iaav
2 Replies
LEARN ABOUT CENTOS
paps
PAPS(1) General Commands Manual PAPS(1)NAME
paps - UTF-8 to PostScript converter using Pango
SYNOPSIS
paps [options] files...
DESCRIPTION
paps reads a UTF-8 encoded file and generates a PostScript language rendering of the file. The rendering is done by creating outline curves
through the pango ft2 backend.
OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is
included below.
--landscape
Landscape output. Default is portrait.
--columns=cl
Number of columns output. Default is 1.
--font=desc
Set the font description. Default is Monospace 12.
--rtl Do rtl layout.
--paper ps
Choose paper size. Known paper sizes are legal, letter, a4. Default is A4.
--bottom-margin=bm
Set bottom margin in postscript points (1/72 inch). Default is 36.
--top-margin=tm
Set top margin. Default is 36.
--left-margin=lm
Set left margin. Default is 36.
--right-margin=rm
Set right margin. Default is 36.
--help Show summary of options.
--header
Draw page header for each page.
--markup
Interpret the text as pango markup.
--encoding=ENCODING
Assume the documentation encoding is ENCODING.
--lpi Set the lines per inch. This determines the line spacing.
--cpi Set the characters per inch. This is an alternative method of specifying the font size.
--stretch-chars
Indicates that characters should be stretched in the y-direction to fill up their vertical space. This is similar to the texttops
behaviour.
AUTHOR
paps was written by Dov Grobgeld <dov.grobgeld@gmail.com>.
This manual page was written by Lior Kaplan <kaplan@debian.org>, for the Debian project (but may be used by others).
April 17, 2006 PAPS(1)
11-07-2014
