Hi
I need to compare shadow file sizes with their real file counterparts. If the shadow file size differs form the realfile size then it must send a mail. My problem is that our system has over 1600 shadowfiles in different directories, with different names. the only consistancy is the .sh file... (4 Replies)
hi,
i have a file called file1.txt and it's contents are as below:
file1.txt:
-------
abc,123, thomas
dab,234,muller
gab,456,ram
The lookup file's contents are as below:
lookup.txt
----------
abc|japan
dcd|US
dab|china
gab|brazil (3 Replies)
I've two files with data like below:
file1.txt:
AAA,Apples,123
BBB,Bananas,124
CCC,Carrot,125
file2.txt:
Store1|AAA|123|11
Store2|BBB|124|23
Store3|CCC|125|57
Store4|DDD|126|38
So,the field separator in file1.txt is a comma and in file2.txt,it is |
Now,the output should be... (2 Replies)
Hi Guys ,
we have one directory ...in that directory all files will be set on each day..
files must have header ,contents ,footer..
i wants to compare the header,contents,footer ..if its same means display an error message as 'files contents same' (7 Replies)
I am trying to do a comparison between two files, and trying to output the difference between the two files.
Let's take FileA.txt and FileB.txt for example:
FileA.txt
--------
Just A Fool:Christina Aguilera feat. Blake Shelton:Lotus (Deluxe Edition)
Figure 8:Ellie Goulding:Halcyon... (4 Replies)
Hi ,
i have a text file in which i want to put delimiters after certain characters ( fix),.
like put a delimiter (any like ,) after 1-3 character than 4 than 5 than 6-17 .....
files looks like this (original)... (8 Replies)
I hope I can explain this correctly. I am using Bash-4.2 for my shell.
I have a group of file names held in an array. I want to compare the names in this array against the names of files currently present in a directory. If the file does not exist in the directory, that is not a problem.... (5 Replies)
Hello All,
I am trying to join two files, each with differing delimiters. file1 has
doe, john 10.00 60.00 4.00 5.00
doe, jane 10.00 60.00 4.00 5.00
...while file2 has the following content:
doe, johnz 10.00::60.00:4.00:5.00
doe, janet 10.00:60.00::4.00:5.00
Currently, I have join... (2 Replies)
I have two file as given below which shows the ACL permissions of each file. I need to compare the source file with target file and list down the difference as specified below in required output. Can someone help me on this ?
Source File
*************
# file: /local/test_1
# owner: own
#... (4 Replies)
Discussion started by: sarathy_a35
4 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)