but how i can call this in .sql, how $filecount replace in .sql file
how are you trying to use it?
That sql you provided doesn't have any "line counts" .. so where do you want to use the line count in that query ?
[edit]
oh wait ..
just noticed you changed your question part way through and I missed it
Quote:
where acc in ( all records which are in acc.txt)
that gets a lot trickier ...
I'd probably use an external table pointing to the file, then just join with that table ... Are you using ORACLE ? or some other DB ? External tables are Oracle, other DB may have other tools for loading/peeking into files ...
Hi my UNIX Friends,
Im calling some SQL scripts through Unix Shell scripting.
How do I export the value of PL/SQL variable value into a Unix shell script variable?
Also could any one inform me about the 'search' and 'cut' utility of PL/SQL
(like 'grep' and 'cut' in Shell scripting).
... (10 Replies)
Hi Folks,
This is a small chunk of the bigger problem which i am facing and some help here will help me resolve the rest of the issue.
Problem is that i need to pass the value of a variable from a shell script to a SQL query (infact a lot of SQL's)
i have the following solution but somehow... (4 Replies)
hi I all ,
I have sql statment in my shell script , I pass two argument to the script I need to pass the this two arguments to the sql statment
example :
runsql.sh "1" "2"
sql :
updat tables_x set y=0
where
A=:x should subsituted by "1"
and
B=:y shuold subsituted bt "2"... (1 Reply)
Hi Gurus,
i have one requirement in unix script, i have a file called abc.txt in that few lines are there with the empid, i need to read each line and pass to .sql script.
ex:
abc.txt
2345
2346
1243
1234
i need to pass these arguments to .sql script rom unix
ex:
select * from... (1 Reply)
Hi Everyone,
Can anyone help me how do i call hash variable in to sql query in perl. Please see the script below
i have defined two Hash %lc and %tab as below
$lc{'REFF'}='V_RES_CLASS';
$lc{'CALE'}='V_CAP_CLASS';
$lc{'XRPD'}='V_XFMR_CLASS';
$tab{'V_RES_CLASS'}='V_MFR_SERS';... (6 Replies)
I have a requirement where i have a sql file (filetext.sql). This file contains a variable ss_code.
Now in a shell script im trying to replace the variable ss_code with a value contained in the shell script variable MTK_DC..tried the below in the script
MTK_DC="mit,cit,bit"
OUT=`awk -v... (4 Replies)
Here is the requirement, When I run the "run file KSH (sql)", it should substitute
'${pCW_Bgn_DT}' with 201120
and
'${pCW_End_DT}' with 201124
Input File
----------
$ cat prevwk.dat
201124 20110711
run file KSH (sql)
------------------
In this file, I want to use the variables... (1 Reply)
Hi Guys,
I am trying to pass a string variable from Unix shell script to sqlplus as a parameter.
I have tried using single quotes with the variable name but it does not work. Please help me with it.
I am using BASH.
My code:
Your help is much appreciated.
Thanks,
shil (2 Replies)
How to pass variable to sql file.
Im tryin in two ways,
Method 1:
my.sql
select * from table where col1 = '$1' and col2 = 'text';
Method 1execute: dbaccess database my.sql $var
Method2:
select * from table col1 in (`cat inputfile`) and col2 = 'text';
method... (2 Replies)
OS Solaris 10,
DB oracle 10g
Hello,
We currently have a BASH script that runs and moves image files from a remote server to the local db server. A snippet of the code shows that we are picking up all Images that are 'mtime -1'
some code...
for file in `ssh user@10.200.200.10 'find... (3 Replies)
Discussion started by: JonP
3 Replies
LEARN ABOUT DEBIAN
idfetch
IDFETCH(1) NCBI Tools User's Manual IDFETCH(1)NAME
idfetch - retrieve biological data from the NCBI ID1 server
SYNOPSIS
idfetch [-] [-F str] [-G filename] [-Q filename] [-c N] [-d str] [-e N] [-f str] [-g N] [-i N] [-l filename] [-n] [-o filename] [-q str]
[-s str] [-t N]
DESCRIPTION
idfetch is a client for NCBI's ID1 server, which contains a large database of annotated biological sequences.
OPTIONS
A summary of options is included below.
- Print usage message
-F str Add the specified feature types (comma-delimited); allowed values are CDD, SNP, SNP_graph, MGC, HPRD, STS, tRNA, and microRNA.
-G filename
File with list of GIs, (versioned) accessions, FASTA SeqIDs to dump
-Q filename
Generate GI list by Entrez query in filename; requires -dn or -dp.
-c N Max complexity:
0 get the whole blob (default)
1 get the bioseq of interest
2 get the minimal bioseq-set containing the bioseq of interest
3 get the minimal nuc-prot containing the bioseq of interest
4 get the minimal pub-set containing the bioseq of interest
-d str Database to use (with -q, can be either n for nucleotides or p for proteins).
-e N Entity number (retrieval number) to dump
-f str Flattened SeqId. Possible formats:
type([name][,[accession][,[release][,version]]]) as '5(HUMHBB)'
type=accession
type:number
(type is a number indicating the ASN.1 Seq-id subtype.)
-g N GI id for single Entity to dump
-i N Type of lookup:
0 get Seq-entry (default)
1 get GI state (output to stderr)
2 get SeqIds
3 get GI history (sequence change only)
4 get revision history (any change to ASN.1)
-l filename
Log file
-n Output only the list of GIs (with -q and -Q).
-o filename
Filename for output (default = stdout)
-q str Generate gi list by Entrez query. Requires -dn or -dp.
-s str FASTA style SeqId ENCLOSED IN QUOTES. Formats:
lcl|int or str
bbs|int
bbm|int
gb|acc|loc
emb|acc|loc
pir|acc|name
sp|acc|name
pat|country|patent|seq
gi|int
dbj|acc|loc
prf|acc|name
pdb|entry|chain
-t N Output type:
1 text ASN.1 (default)
2 binary ASN.1
3 GenBank (Seq-entry only)
4 GenPept (Seq-entry only)
5 FASTA (table for history)
6 quality scores (Seq-entry only)
7 Entrez DocSums
8 FASTA reverse complement
AUTHOR
The National Center for Biotechnology Information.
NCBI 2011-09-02 IDFETCH(1)