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Full Discussion: Combine shell files
Top Forums Shell Programming and Scripting Combine shell files Post 302923508 by cmccabe on Monday 3rd of November 2014 11:11:22 AM
Old 11-03-2014
The code is similar in that it is the same basic structure with additional functionality trying to be added. Being new to awk and learning I tried following your example (thank you for that):

Code:
 #!/bin/bash			
show_menu=true
	menu=( "[yY]" "[nN]" )
	func_show() { # "MESSAGE STRING"
	# Prints passed argument
	# Returns nothing
		printf '\n\t%s\n\n' "$1"
	}
#
#	Display & Action
#
	clear
	while $show_menu
	do	printf '#----------------------#\n%s\n' "Are there additonal patients to be matched"
		select entry in "${menu[@]}" Back
		do	case "$entry" in
			Back)		show_menu=false
					;;
			"[yY]")	func_show "perl -aF/\\t/ -lne 'BEGIN{%m=map{chomp;s/\cM|\cJ//g;$p=join("\t",(split/\t/)[4,5]);($p,$_)} <>;$m{"#CHROM\tINFO"}=$m{"Chr\tSegment Position"}};/SEGPOS=(\d+)/ || /\t(INFO)\t/ or next;$p=$F[0]."\t".$1;exists $m{$p} and print join("\t",$_,$m{$p})' ${id}_${panel}_${OMR}.txt < ${id}_${panel}_${OMR}_Filtered.vcf > ${id}_matched.vcf (index id 0) :: $entry"
					;;
			"${menu[2]}")	func_show "printf "Does the file need to be converted  : " ; read id :: ${menu[${#menu[@]}-1]}"
					;;
			*)		
			esac
			break
		done
	done

This is just the first section of the script. If a "Y" response is given it will run a perl command, but if "N' is given it prompts the user and thats all. Is that correct? Thank you Smilie.
 

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uudemon(4)						     Kernel Interfaces Manual							uudemon(4)

NAME
uudemon.admin, uudemon.cleanu, uudemon.hour, uudemon.poll - Administrative shell scripts for polling remote systems, cleaning up spool directories, reporting status to the system administrator, and routine invocations of the uuxqt and uusched daemons SYNOPSIS
These shell scripts reside in the following directory: /usr/lib/uucp DESCRIPTION
All the scripts can be run from the command line or can be run automatically by the cron daemon. To automatically run the scripts, remove the comment character (#) from the beginning of the relevant line in the /var/spool/cron/crontabs/uucp file. This script reports status to the system administrator. It issues the uustat command to find out the status of uucp jobs. It mails the results to the uucp login ID. The script may be modified to send mail to any login ID such as the uucp administrative login ID (uucpa) or root. This script cleans up the /var/spool/uucp and /var/spool/uucppublic directories by running the uucleanup command. The uucleanup com- mand is run with the following parameters: -C7, -D7, X2, -o2, -W1. This script runs the uusched and uuxqt daemons in the background. This script polls the systems listed in the /usr/lib/uucp/Poll file. The uudemon.poll script should be scheduled before the uudemon.hour script. This allows uudemon.poll to create any command files before cron runs the uudemon.hour script. FILES
Contains the uudemon.admin, uudemon.cleanu, uudemon.hour and uudemon.poll files. Contains the uucp file. RELATED INFORMATION
Commands: cron(8), uucleanup(8), uusched(8), uuxqt(1) Files: /usr/lib/uucp delim off uudemon(4)
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