10-20-2014
oh my gosh..
can you explain step by step.
it works
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi all,
This should be very easy but I can't figure it out...
I have a file that looks like this:
@SRR057408.1 FW8Y5CK02R652T length=34
AGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT
+SRR057408.1 FW8Y5CK02R652T length=34
FIIHFF6666?=:88@@@BBD:::?@ABBAAA>8
@SRR057408.2 FW8Y5CK02TBMHV length=52... (1 Reply)
Discussion started by: kmkocot
1 Replies
2. Shell Programming and Scripting
abc.dat
tty cpu
tin tout us sy wt id
0 0 7 3 19 71
extended device statistics
r/s w/s kr/s kw/s wait actv wsvc_t asvc_t %w %b device
0.0 133.2 0.0 682.9 0.0 1.0 0.0 7.2 0 79 c1t0d0
0.2 180.4 0.1 5471.2 3.0 2.8 16.4 15.6 15 52 aaaaaa1-xx
I want to skip first 5 line... (4 Replies)
Discussion started by: kchinnam
4 Replies
3. UNIX for Dummies Questions & Answers
I have my file input
Land,A,091374346294,Cathay,165
Island,B,091370291502,Cathay,3325
Island,P,091366545904,Cathay,440
Island,C,091368476591,Cathay,99000
Land,A,091379924879,Cathay,0
Land,P,091378222275,Cathay,245
Water,X,091369911459,Cathay,0
Island,B,091377596759,Cathay,0... (5 Replies)
Discussion started by: radius
5 Replies
4. UNIX for Dummies Questions & Answers
URGENT HELP IS NEEDED!!
I am looking to move matching lines (01 - 07) from File1 and 77 tab the matching string from File2, to File3.txt. I am almost done but
- Currently, script is not printing lines to File3.txt in order.
- Also the matching lines are not moving out of File1.txt
... (1 Reply)
Discussion started by: High-T
1 Replies
5. Shell Programming and Scripting
In the tab delimited files below I am trying to match $2 in file1 to $2 of file2. If a match is found the awk checks $3 of file2 and if it is greater than 40% and $4 of file2 is greater than 49, the line in file1 is printed. In the desired output line3 of file1 is not printed because $3 off file2... (9 Replies)
Discussion started by: cmccabe
9 Replies
6. Shell Programming and Scripting
I have a large XML file that I want to parse, and only print one specific value if two values are met.
This is the code so far:
#!/usr/local/bin/python
import xml.etree.ElementTree as ET
tree = ET.parse('onedb-dhcp.xml')
root = tree.getroot()
# This successfully gets all... (1 Reply)
Discussion started by: brianjb
1 Replies
7. Shell Programming and Scripting
I am trying to modify and understand an awk written by @Scrutinizer
The below awk will filter a list of 30,000 lines in the tab-delimited file. What I am having trouble with is adding a condition to SVTYPE=CNV
that will only print that line if CI=,0.95: portion in blue in file is <1.9.
The... (2 Replies)
Discussion started by: cmccabe
2 Replies
8. Shell Programming and Scripting
In the awk below I am trying to print only the header lines starting with # or ## and the lines that $7 is PASS and AF= is less than 5%. The awk does execute but returns an empty file and I am not sure what I am doing wrong. Thank you.
file
... (0 Replies)
Discussion started by: cmccabe
0 Replies
9. Shell Programming and Scripting
I am trying to use awk to print lines that satisfy either of the two conditions below:
condition 1: $2 equals CNV and the split of $3, the value in red, is greater than or equal to 4. ---- this is a or so I think
condition 2: $2 equals CNV and the split of $3, the value in red --- this is a... (4 Replies)
Discussion started by: cmccabe
4 Replies
10. UNIX for Beginners Questions & Answers
I have a directory of files, I can show the number of lines in each file and order them from lowest to highest with:
wc -l *|sort
15263 Image.txt
16401 reference.txt
40459 richtexteditor.txt
How can I also print the number of unique lines in each file?
15263 1401 Image.txt
16401... (15 Replies)
Discussion started by: spacegoose
15 Replies
comm(1) General Commands Manual comm(1)
NAME
comm - select or reject lines common to two sorted files
SYNOPSIS
file1 file2
DESCRIPTION
comm reads file1 and file2, which should be ordered in increasing collating sequence (see sort(1) and Environment Variables below), and
produces a three-column output:
Column 1: Lines that appear only in file1,
Column 2: Lines that appear only in file2,
Column 3: Lines that appear in both files.
If is used for file1 or file2, the standard input is used.
Options 1, 2, or 3 suppress printing of the corresponding column. Thus prints only the lines common to the two files; prints only lines in
the first file but not in the second; does nothing useful.
EXTERNAL INFLUENCES
Environment Variables
determines the collating sequence expects from the input files.
determines the language in which messages are displayed.
If is not specified in the environment or is set to the empty string, the value of determines the language in which messages are displayed.
If is not specified in the environment or is set to the empty string, the value of is used as a default. If is not specified or is set to
the empty string, a default of ``C'' (see lang(5)) is used instead of If any internationalization variable contains an invalid setting,
behaves as if all internationalization variables are set to ``C''. See environ(5).
International Code Set Support
Single- and multi-byte character code sets are supported.
EXAMPLES
The following examples assume that and have been ordered in the collating sequence defined by the or environment variable.
Print all lines common to and (in other words, print column 3):
Print all lines that appear in but not in (in other words, print column 1):
Print all lines that appear in but not in (in other words, print column 2):
SEE ALSO
cmp(1), diff(1), sdiff(1), sort(1), uniq(1).
STANDARDS CONFORMANCE
comm(1)