Hi all,
This should be very easy but I can't figure it out...
I have a file that looks like this:
@SRR057408.1 FW8Y5CK02R652T length=34
AGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT
+SRR057408.1 FW8Y5CK02R652T length=34
FIIHFF6666?=:88@@@BBD:::?@ABBAAA>8
@SRR057408.2 FW8Y5CK02TBMHV length=52... (1 Reply)
I have my file input
Land,A,091374346294,Cathay,165
Island,B,091370291502,Cathay,3325
Island,P,091366545904,Cathay,440
Island,C,091368476591,Cathay,99000
Land,A,091379924879,Cathay,0
Land,P,091378222275,Cathay,245
Water,X,091369911459,Cathay,0
Island,B,091377596759,Cathay,0... (5 Replies)
URGENT HELP IS NEEDED!!
I am looking to move matching lines (01 - 07) from File1 and 77 tab the matching string from File2, to File3.txt. I am almost done but
- Currently, script is not printing lines to File3.txt in order.
- Also the matching lines are not moving out of File1.txt
... (1 Reply)
In the tab delimited files below I am trying to match $2 in file1 to $2 of file2. If a match is found the awk checks $3 of file2 and if it is greater than 40% and $4 of file2 is greater than 49, the line in file1 is printed. In the desired output line3 of file1 is not printed because $3 off file2... (9 Replies)
I have a large XML file that I want to parse, and only print one specific value if two values are met.
This is the code so far:
#!/usr/local/bin/python
import xml.etree.ElementTree as ET
tree = ET.parse('onedb-dhcp.xml')
root = tree.getroot()
# This successfully gets all... (1 Reply)
I am trying to modify and understand an awk written by @Scrutinizer
The below awk will filter a list of 30,000 lines in the tab-delimited file. What I am having trouble with is adding a condition to SVTYPE=CNV
that will only print that line if CI=,0.95: portion in blue in file is <1.9.
The... (2 Replies)
In the awk below I am trying to print only the header lines starting with # or ## and the lines that $7 is PASS and AF= is less than 5%. The awk does execute but returns an empty file and I am not sure what I am doing wrong. Thank you.
file
... (0 Replies)
I am trying to use awk to print lines that satisfy either of the two conditions below:
condition 1: $2 equals CNV and the split of $3, the value in red, is greater than or equal to 4. ---- this is a or so I think
condition 2: $2 equals CNV and the split of $3, the value in red --- this is a... (4 Replies)
I have a directory of files, I can show the number of lines in each file and order them from lowest to highest with:
wc -l *|sort
15263 Image.txt
16401 reference.txt
40459 richtexteditor.txt
How can I also print the number of unique lines in each file?
15263 1401 Image.txt
16401... (15 Replies)
Discussion started by: spacegoose
15 Replies
LEARN ABOUT DEBIAN
h5diff
h5diff(1) General Commands Manual h5diff(1)NAME
h5diff - Compares two HDF5 files and reports the differences.
SYNOPSIS
h5diff file1 file2 [OPTIONS] [object1 [object2 ] ]
DESCRIPTION
h5diff is a command line tool that compares two HDF5 files, file1 and file2, and reports the differences between them.
Optionally, h5diff will compare two objects within these files. If only one object, object1, is specified, h5diff will compare object1 in
file1 with object1 in file2. In two objects, object1 and object2, are specified, h5diff will compare object1 in file1 with object2 in
file2. These objects must be HDF5 datasets.
object1 and object2 must be expressed as absolute paths from the respective file's root group.
Additional information, with several sample cases, can be found in the document H5diff Examples.
OPTIONS
file1 file2
The HDF5 files to be compared.
-h Print all differences.
-r Print only the names of objects that differ; do not print the differences. These objects may be HDF5 datasets, groups, or named
datatypes.
-n count
Print difference up to count differences, then stop. count must be a positive integer.
-d delta
Print only differences that are greater than the limit delta. delta must be a positive number. The comparison criterion is whether
the absolute value of the difference of two corresponding values is greater than delta (e.g., |a-b| > delta, where a is a value in
file1 and b is a value in file2).
-p relative
Print only differences that are greater than a relative error. relative must be a positive number. The comparison criterion is
whether the absolute value of the difference 1 and the ratio of two corresponding values is greater than relative (e.g., |1-(b/a)| >
relative where a is a value in file1 and b is a value in file2).
object1 object2
Specific object(s) within the files to be compared.
EXAMPLES
The following h5diff call compares the object /a/b in file1 with the object /a/c in file2:
h5diff file1 file2 /a/b /a/c
This h5diff call compares the object /a/b in file1 with the same object in file2:
h5diff file1 file2 /a/b
And this h5diff call compares all objects in both files:
h5diff file1 file2
SEE ALSO h5dump(1), h5ls(1), h5repart(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1)h5diff(1)