Sponsored Content
Full Discussion: awk to parse html file
Top Forums Shell Programming and Scripting awk to parse html file Post 302919216 by shamrock on Monday 29th of September 2014 03:17:51 PM
Old 09-29-2014
Quote:
Originally Posted by cmccabe
Is it possible in awk to parse a webpage (EDAR Gene Sequencing - Genetic Testing Company | The DNA Diagnostic Experts | GeneDx), the source code is attached.

HTML Code:
<title> EDAR Gene Sequencing
<dt>Test Code:</dt>
    <dd>156 </dd>
 
    <dt>Turnaround Time:</dt>
    <dd>6-8 weeks </dd>
 
    <dt>Preferred Specimen:</dt>
    <dd>2-5 mL Blood - Lavender Top Tube </dd>
 
<dt>CPT Codes:</dt>
    <dd>81479x1</dd>
 
<ul id="clinical-utility">
    <li>Confirmation of a clinical diagnosis </li>
    <li>Differentiation between X-linked and autosomal forms of the disease </li>
    <li>Prenatal diagnosis in at-risk pregnancies</li>
 
<ol id="references">
    <li>Bal, E et al. Hum Mutat. 28:703-709, 2007.</li>
    <li>Headon et al. Nature. 414:913-916, 2001.</li>
    <li>Monreal et al. Nat Genet 22:366-369, 1999.</li>
    <li>Chassaing et al. Hum Mutat. 27(3):255-259, 2006</li>
The <.....> are not needed only the text is, if it is possible. Thanks Smilie.
Can you post what the desired output should look like...
This User Gave Thanks to shamrock For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Advanced & Expert Users

shell script to parse html file

hi all, i have a html file something similar to this. <tr class="evenrow"> <td class="data">added</td><td class="data">xyz@abc.com</td> <td class="data">filename.sql</td><td class="modifications-data">08/25/2009 07:58:40</td><td class="data">Added TK prof script</td> </tr> <tr... (1 Reply)
Discussion started by: sais
1 Replies

2. Shell Programming and Scripting

Parse HTML tag parameters and text

Hi! I have a bunch of HTML files, which I want to parse to CSV files. Every page has a table in it, and I need to parse each row into a csv record. With awk and sed, I managed to put every table row in separate lines. So my file looks like this: <TR> .... </TR> <TR> .... </TR> ...One... (1 Reply)
Discussion started by: senszey
1 Replies

3. Shell Programming and Scripting

Parse file using awk and work in awk output

hi guys, i want to parse a file using public function, the file contain raw data in the below format i want to get the output like this to load it to Oracle DB MARWA1,BSS:26,1,3,0,0,0,0,0.00,22,22,22.00 MARWA2,BSS:26,1,3,0,0,0,0,0.00,22,22,22.00 this the file raw format: Number of... (6 Replies)
Discussion started by: dagigg
6 Replies

4. Shell Programming and Scripting

sed to parse html

Hello, I have a html file like this : <html> ... ... ... <table> ....... ...... </table> <table name = "hi"> ...... ..... ... </table> <h1> Welcome </h1> ....... ...... </html> (11 Replies)
Discussion started by: prasanna1157
11 Replies

5. Shell Programming and Scripting

Extract/Parse information from html (website)

Hello, I want to extract some informations from a html (website, http://www.energiecontracting.de/7-mitglieder/von-A-Z.php?a_z=B&seite=2 ) file and save those in a predefined format (.csv).. However it seems that the code on that website is kinda messy and I can't find a way to handle it... (5 Replies)
Discussion started by: TehOne
5 Replies

6. Shell Programming and Scripting

Using awk to Parse File

Hi all, I have a file that contains a good hundred of these job definitions below: Job Name Last Start Last End ST Run Pri/Xit ________________________________________________________________ ____________________... (7 Replies)
Discussion started by: atticuss
7 Replies

7. Shell Programming and Scripting

Parse excel file with html on each cell

<DIV><P>Pré-condição aceder ao ecrã Home do MRS.</P></DIV><DIV><P>OK.</P></DIV><DIV><P>Seleccionar Pesquisa de Recepção Directa.</P></DIV><DIV><P>Confirmar que abriu ecrã de Recepção Directa.</P></DIV><DIV> (6 Replies)
Discussion started by: oliveiraum
6 Replies

8. Shell Programming and Scripting

Parse multiple html files in directory

I have downloaded source code for 97 files using: wget -x -i link.txt then run a rename loop: for file in * do mv $file $file.txt done to keep the html tags but make the file a text that can be parsed. In each of the 97 txt files the gene # is variable, but the gene is associated... (15 Replies)
Discussion started by: cmccabe
15 Replies

9. Shell Programming and Scripting

Parse html

I downloaded source code using: wget -qO- http://fulgentdiagnostics.com/test/clinical-exome/ | cat > flugentsource.txt Now I am trying to use sed to parse it to confirm a gene count. Basically, output (flugent.txt) all the gene names with a total count after them I'm not all that... (5 Replies)
Discussion started by: cmccabe
5 Replies

10. UNIX for Beginners Questions & Answers

How to parse a specifc value between html tags using sed?

Hi, im trying to read a Temperature value from html code. So far i have managed to reduce the whole html page down to this single line with the following sed command:sed -n '/Temperature/p' $temp_temperature | tee temp_string <TD width='350'>Temperature :</td><td>25... (2 Replies)
Discussion started by: naittis
2 Replies
All times are GMT -4. The time now is 09:33 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy