I hope somebody can help me with this problem, since I would like to solve this problem using awk, but im not experienced enough with this.
I have two files which i want to match, and output the matching column name and row number.
One file contains 4 columns like this:
FILE1:
and the second file just one column with entries:
FILE2:
I want for the entries in FILE2, to find the value they match to in FILE1, within a certain range of 2 (so +/- 2). And output the column name and the row number
So the output would be:
I can do this using loops, but this takes long because of the size of the files.
Is there a way of doing this using AWK?
Sorry I don't have any code of what I tried yet. I was trying code from previous questions, but didn't really get close to what I need..
Last edited by Corona688; 09-22-2014 at 12:30 PM..
Hi,
On a similar subject, the following. I have two files:
file1.txt
dbSNP_rsID,Chromosome,Position,Gene
rs10399749,chr. 01,45162,?
rs4030303,chr. 01,72434,?
rs4030300,chr. 01,72515,?
rs940550,chr. 01,78032,?
rs13328714,chr. 01,81468,?
rs11490937,chr. 01,222077,?
rs6683466,chr.... (5 Replies)
Dear Forum,
Full title of the topic would be: "Join 3 or more files using matching column without full list in any of these columns"
I have several, typically 3 or 4 files which I need to join, something like FULL JOIN in slq scripts, all combinations of matches should be printed into an... (3 Replies)
I have a file like:
I would like to find lines lines with duplicate values in column 1, and retain only one based on two conditions: 1) keep line with highest value in column 3, 2) if column 3 values are equal, retain the line with the highest value in column 4.
Desired output:
I was able to... (3 Replies)
Hi,
Please excuse for often requesting queries and making R&D, I am trying to work out a possibility where i have two files field separated by pipe and another file containing only one field where there is no matching columns, Could you please advise how to merge two files.
$more... (3 Replies)
I have 2 files. File 1 has more columns (6 columns but the last column has spaces) than file 2 (file 2 has 4 columns). The entries in file 1 do not change but column 4 in file 2 can be different from the the entry in file 1. I want to create a script that reads in file 1 and then uses column 1 2... (5 Replies)
Good evening
I have the below requirements, as I am not an experts in Linux/Unix and am looking for your ideas how I can do this.
I have file called file1 and file2.
I need to get the second column which is text1_random_alphabets and find that in file 2, if it's exists then print the 3rd... (4 Replies)
there can be n number of columns but the number of columns and header name will remain same in all 3 files. Files are tab Delimited.
a.txt
Name 9/1 9/2
X 1 7
y 2 8
z 3 9
a 4 10
b 5 11
c 6 12
b.xt
Name 9/1 9/2
X 13 19
y 14 20
z 15 21
a 16 22
b 17 23
c 18 24 c.txt
Name 9/1 9/2... (14 Replies)
First I'd like to apologize if I opened a thread which is already open somewhere.
I did a bit of searching but could quite find what I was looking for, so I will try to explaing what I need.
I'm writing a script on our server, got to a point where I have two files with results. Example:
File1... (6 Replies)
Hi,
I have a tab delimited file1:
NC_013499.1 3180 3269 GQ342961.1
NC_030295.1 5925 6014 FN398100.2
NC_007915.1 6307 6396 KU529284.1
NC_013499.1 5033 5122 GQ342961.1
And a second file2:
NC_030295.1 RefSeq gene 136 5115 ... (6 Replies)
Discussion started by: Ibk
6 Replies
LEARN ABOUT OSX
locale::codes::langfam
Locale::Codes::LangFam(3pm) Perl Programmers Reference Guide Locale::Codes::LangFam(3pm)NAME
Locale::Codes::LangFam - standard codes for language extension identification
SYNOPSIS
use Locale::Codes::LangFam;
$lext = code2langfam('apa'); # $lext gets 'Apache languages'
$code = langfam2code('Apache languages'); # $code gets 'apa'
@codes = all_langfam_codes();
@names = all_langfam_names();
DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
ISO 639-5.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
language family codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
constant that is automatically exported by this module.
For example, the two are equivalent:
$lext = code2langfam('apa','alpha');
$lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);
The codesets currently supported are:
alpha
This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.
This is the default code set.
ROUTINES
code2langfam ( CODE [,CODESET] )
langfam2code ( NAME [,CODESET] )
langfam_code2code ( CODE ,CODESET ,CODESET2 )
all_langfam_codes ( [CODESET] )
all_langfam_names ( [CODESET] )
Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] )
Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] )
Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] )
Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME )
Locale::Codes::LangFam::delete_langfam_alias ( NAME )
Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.loc.gov/standards/iso639-5/id.php
ISO 639-5 .
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 2011-2012 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.16.2 2012-10-11 Locale::Codes::LangFam(3pm)