Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Search and replace with a sliding window Post 302907288 by RudiC on Friday 27th of June 2014 06:25:03 AM
Old 06-27-2014
Try this (yields the desired result without formally forming a 3 letter window):
Code:
awk     '       {while (gsub(/C[^G][^G]/, "@&")) gsub(/@C/,"!")}
                {while (gsub(/[^C][^C]G/, "&@")) gsub(/G@/,"!")}
         1
        ' file
>header_1
T!!CCGA
>header_2
!!AATT!!!TA

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Perl: Search for string on line then search and replace text

Hi All, I have a file that I need to be able to find a pattern match on a line, search that line for a text pattern, and replace that text. An example of 4 lines in my file is: 1. MatchText_randomNumberOfText moreData ReplaceMe moreData 2. MatchText_randomNumberOfText moreData moreData... (4 Replies)
Discussion started by: Crypto
4 Replies

2. Shell Programming and Scripting

awk - replace number of string length from search and replace for a serialized array

Hello, I really would appreciate some help with a bash script for some string manipulation on an SQL dump: I'd like to be able to rename "sites/WHATEVER/files" to "sites/SOMETHINGELSE/files" within the sql dump. This is quite easy with sed: sed -e... (1 Reply)
Discussion started by: otrotipo
1 Replies

3. Shell Programming and Scripting

Script help: sliding time windows

I have a script like this ... #!/bin/ksh database=$(echo $@ | sed 's/.*-S \(*\).*/\1/') instance=$(grep $database /var/opt/oracle/oratab | awk -F : '{print $1}') command=$(echo $@ | sed "s/$database/$instance/") echo $command if I execute this script in ksh or bash it works fine . ... (3 Replies)
Discussion started by: talashil
3 Replies

4. Shell Programming and Scripting

Sliding window for sequencing data

Hi! I have some sequencing data that I have aligned using maq software Now, I have data that looks like this each line is a 'tag' chr1 10001 chr1 10002 chr1 10005 chr1 10007 chr1 10008 chr1 10008 chr1 10008 chr1 10019 chr1 10019 chr1 10020 What I really want to find out is how... (1 Reply)
Discussion started by: biobio
1 Replies

5. UNIX for Dummies Questions & Answers

Sliding window

Very simple problem I am not able to solve. I have been trying to modify the following code: awk '{t=$1; c = x}{for (i = 1; i <= length; i += wn)print t FS"" substr($2, i, mx) > ("block" ++c)}' mx=100 wn=100 infile.txt What I am tryng to acccomplish, I have a bunch of files where the first... (3 Replies)
Discussion started by: Xterra
3 Replies

6. UNIX for Dummies Questions & Answers

"Sliding window" with variables

I'm doing a little work that involves computing the average completion time of the last 5 of many file decompressions. It's not too tough, but I'm wondering if maybe there's a better way to write it. This is a bash script; here's the current idea: ctime5=$ctime4 ctime4=$ctime3 ctime3=$ctime2... (2 Replies)
Discussion started by: treesloth
2 Replies

7. Shell Programming and Scripting

Sliding window for string manipulation

I have a sting of "0"s and "1"s that I need to analyze. I need to look at each "1" and determine if it is in a neighborhood that is enriched for "1"s which means it is one of at least three "1"s in a 4 character window. My desired output is a count of "1"s in an enriched area. For Example Input... (1 Reply)
Discussion started by: monstrousturtle
1 Replies

8. Shell Programming and Scripting

How do add values in a vector using a sliding window?

Greetings. I have a vector of numbers such as the following: 1 75 79 90 91 92 109 120 167 198 203 204 206 224 230 236 240 (4 Replies)
Discussion started by: Twinklefingers
4 Replies

9. Shell Programming and Scripting

Nested search in a file and replace the inner search

Hi Team, I am new to unix, please help me in this. I have a file named properties. The content of the file is : ##Mobile props east.url=https://qa.east.corp.com/prop/end west.url=https://qa.west.corp.com/prop/end south.url=https://qa.south.corp.com/prop/end... (2 Replies)
Discussion started by: tolearn
2 Replies

10. Programming

Xlib search window by his name

Hello, I just try to get the control of a Window by searching his name. I curretly do that : Window CMD::window_from_name_search(Display *display, Window current, char const *needle) { Window retval, root, parent, *children; unsigned children_count; char *name = NULL; ... (0 Replies)
Discussion started by: Loustak
0 Replies
Locale::Language(3perl) 				 Perl Programmers Reference Guide				   Locale::Language(3perl)

NAME
Locale::Language - standard codes for language identification SYNOPSIS
use Locale::Language; $lang = code2language('en'); # $lang gets 'English' $code = language2code('French'); # $code gets 'fr' @codes = all_language_codes(); @names = all_language_names(); DESCRIPTION
The "Locale::Language" module provides access to standard codes used for identifying languages, such as those as defined in ISO 639. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639 two- letter codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying languages. The ones currently supported are: alpha-2 This is the set of two-letter (lowercase) codes from ISO 639, such as 'he' for Hebrew. This code set is identified with the symbol "LOCALE_LANG_ALPHA_2". This is the default code set. alpha-3 This is the set of three-letter (lowercase) bibliographic codes from ISO 639, such as 'heb' for Hebrew. This code set is identified with the symbol "LOCALE_LANG_ALPHA_3". term This is the set of three-letter (lowercase) terminologic codes from ISO 639. This code set is identified with the symbol "LOCALE_LANG_TERM". ROUTINES
code2language ( CODE [,CODESET] ) language2code ( NAME [,CODESET] ) language_code2code ( CODE ,CODESET ,CODESET2 ) all_language_codes ( [CODESET] ) all_language_names ( [CODESET] ) Locale::Language::rename_language ( CODE ,NEW_NAME [,CODESET] ) Locale::Language::add_language ( CODE ,NAME [,CODESET] ) Locale::Language::delete_language ( CODE [,CODESET] ) Locale::Language::add_language_alias ( NAME ,NEW_NAME ) Locale::Language::delete_language_alias ( NAME ) Locale::Language::rename_language_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Language::add_language_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Language::delete_language_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes man page. SEE ALSO
Locale::Codes Locale::Constants http://www.loc.gov/standards/iso639-2/ Source of the ISO 639 codes. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 1997-2001 Canon Research Centre Europe (CRE). Copyright (c) 2001-2010 Neil Bowers Copyright (c) 2010-2011 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.14.2 2011-09-26 Locale::Language(3perl)
All times are GMT -4. The time now is 09:56 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy