Command for non-unique text Post: 302906291

Sponsored Content

Top Forums Shell Programming and Scripting Command for non-unique text Post 302906291 by Corona688 on Wednesday 18th of June 2014 02:06:50 PM

06-18-2014

Registered User

Please show the output you want from this input.

Here is the XML from the attachment:

Code:

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD esummary gtr 20140110//EN" "http://eutils.ncbi.nlm.nih.gov/eutils/dtd/20140110/esummary_gtr.dtd">
<eSummaryResult>
<DocumentSummarySet status="OK">
<DbBuild>Build140618-0600.1</DbBuild>

<DocumentSummary uid="6814">
	<Id>6814</Id>
	<Source>GTR</Source>
	<Accession>GTR000006814</Accession>
	<TestName>UBE3A sequencing</TestName>
	<TestType>Clinical</TestType>
	<ConditionList>
		<Condition>
			<Name>Angelman syndrome</Name>
			<Acronym></Acronym>
			<CUI>C0162635</CUI>
		</Condition>
	</ConditionList>
	<Analytes>
		<Analyte>
			<AnalyteType>Gene</AnalyteType>
			<Name>UBE3A</Name>
			<GeneID>7337</GeneID>
			<Location>15q11.2</Location>
		</Analyte>
	</Analytes>
	<GeneList>
	</GeneList>
	<Offerer>Genetic Services Laboratory University of Chicago</Offerer>
	<OffererLocation>
		<Line1>5841 S. Maryland Ave. Rm G701, MC0077</Line1>
		<Line2></Line2>
		<Line3></Line3>
		<City>Chicago</City>
		<State>Illinois</State>
		<PostCode>60637-6726</PostCode>
		<Country>United States</Country>
	</OffererLocation>
	<OffererID>1238</OffererID>
	<DirectorList>
		<string>Soma Das, PhD, ABMG, Lab Director</string>
	</DirectorList>
	<Summary></Summary>
	<Flags>
	</Flags>
	<Method>
		<TopCategory>
			<Name>Molecular Genetics</Name>
			<CategoriesString>_C_______________</CategoriesString>
			<CategoryList>
				<Category>
					<Name>Sequence analysis of the entire coding region</Name>
					<Code>C</Code>
					<MethodList>
						<string>Bi-directional Sanger Sequence Analysis</string>
					</MethodList>
				</Category>
			</CategoryList>
		</TopCategory>
	</Method>
	<AnalyticalValidity>Analytical Sensitivity 99-100%   Accuracy 100%   Precision 100%</AnalyticalValidity>
	<TargetPopulation>The target population is patients suspected of having a diagnosis of Angelman syndrome.</TargetPopulation>
	<Certifications>
		<Certification>
			<CertificationType>CLIA</CertificationType>
			<id>14D0917593</id>
		</Certification>
		<Certification>
			<CertificationType>CAP</CertificationType>
			<id>18827-49</id>
		</Certification>
	</Certifications>
	<StudyDesc></StudyDesc>
	<TestTargetList>
		<string>UBE3A</string>
	</TestTargetList>
	<ConditionCount>1</ConditionCount>
	<TestTargetCount>1</TestTargetCount>
	<Extra><![CDATA[]]></Extra>
</DocumentSummary>

</DocumentSummarySet>
</eSummaryResult>

Corona688

View Public Profile for Corona688

Visit Corona688's homepage!

Find all posts by Corona688

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

how to read all the unique words in a text file

How can i read all the unique words in a file, i used - cat comment_file.txt | /usr/xpg6/bin/tr -sc 'A-Za-z' '/012' and cat comment_file.txt | /usr/xpg6/bin/tr -sdc 'A-Za-z' '/012' but they didnt worked.....

2. Shell Programming and Scripting

extracting unique lines from text file

I have a file with 14million lines and I would like to extract all the unique lines from the file into another text file. For example: Contents of file1 happy sad smile happy funny sad I want to run a command against file one that only returns the unique lines (ie 1 line for happy...

3. Shell Programming and Scripting

comparing 2 text files to get unique values??

Hi all, I have got a problem while comparing 2 text files and the result should contains the unique values(Non repeatable). For eg: file1.txt 1 2 3 4 file2.txt 2 3 So after comaping the above 2 files I should get only 1 and 4 as the output. Pls help me out.

4. UNIX for Dummies Questions & Answers

Copying Text between two unique text patterns

Dear Colleagues: I have .rtf files of a collection of newspaper articles. Each newspaper article starts with a variation of the phrase "Document * of 20" and is separated from the next article with the character string "===================" I would like to be able to take the text composing...

5. Shell Programming and Scripting

Extracting Text Between Two Unique Lines

Hi all! Im trying to extract a portion of text from a file and put it into a new file. I need all the lines between <Placement> and </Placement> including the Placemark lines themselves. Is there a way to extract all instances of these and not just the first one found? I've tried using sed and...

6. Shell Programming and Scripting

Extracting several lines of text after a unique string

I'm attempting to write a script to identify users who have sudo access on a server. I only want to extract the ID's of the sudo users after a unique line of text. The list of sudo users goes to the EOF so I only need the script to start after the unique line of text. I already have a script to...

7. UNIX for Dummies Questions & Answers

Extract unique combination of rows from text files

Hi Gurus, I have 100 tab-delimited text files each with 21 columns. I want to extract only 2nd and 5th column from each text file. However, the values in both 2bd and 5th column contain duplicate values but the combination of these values in a row are not duplicate. I want to extract only those...

8. Shell Programming and Scripting

awk to print unique text in field

I am trying to use awk to print the unique entries in $2 So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output. File.txt chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807...

9. Shell Programming and Scripting

awk to print unique text in field before hyphen

Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :). file chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1 chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7 chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8...

10. Programming

find & Replace text using two non-unique delimiters.

I can find and replace text when the delimiters are unique. What I cannot do is replace text using two NON-unique delimiters: Ex., "This html code <text blah >contains <garbage blah blah >. All tags must go,<text > but some must be replaced with <garbage blah blah > without erasing other...

LEARN ABOUT DEBIAN

graphics::primitive::insets

Graphics::Primitive::Insets(3pm)			User Contributed Perl Documentation			  Graphics::Primitive::Insets(3pm)

NAME

       Graphics::Primitive::Insets - Space between things

DESCRIPTION

       Graphics::Primitive::Insets represents the amount of space that surrounds something.  This object can be used to represent either padding
       or margins (in the CSS sense, one being inside the bounding box, the other being outside)

SYNOPSIS

	 use Graphics::Primitive::Insets;

	 my $insets = Graphics::Primitive::Insets->new({
	   top	   => 5,
	   bottom  => 5,
	   left    => 5,
	   right   => 5
	 });

METHODS

   Constructor
       new Creates a new Graphics::Primitive::Insets.

   Instance Methods
       as_array
	   Return these insets as an array in the form of top, right, bottom and left.

       bottom
	   Set/Get the inset from the bottom.

       equal_to
	   Determine if these Insets are equal to another.

       left
	   Set/Get the inset from the left.

       right
	   Set/Get the inset from the right.

       top Set/Get the inset from the top.

       zero
	   Sets all the insets (top, left, bottom, right) to 0.

AUTHOR

       Cory Watson, "<gphat@cpan.org>"

SEE ALSO

       perl(1)

COPYRIGHT &; LICENSE
       Copyright 2008-2010 by Cory G Watson.

       This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.12.3							    2010-08-21					  Graphics::Primitive::Insets(3pm)