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Full Discussion: awk output line by line
Top Forums UNIX for Dummies Questions & Answers awk output line by line Post 302905077 by Akshay Hegde on Monday 9th of June 2014 01:36:47 PM
Old 06-09-2014
Welcome to forums, you may try this

Code:
$ awk 'FNR==NR{A[$0];next}NF{ for(i in A){ if(i ~ $1){ $0 = $0 OFS i; break } }}1' file2  file1

OR
Code:
$ awk 'FNR==NR{A[$0];next}NF{ for(i in A){ if(match(i, $1)){ $0 = $0 OFS i; break } }}1' file2 file1

---------- Post updated at 11:55 PM ---------- Previous update was at 11:50 PM ----------

Code:
$ cat file2
PLOD1, LH1, LLH, EDS6|Ehlers-Danlos syndrome, type VI, 225400 (3)

Code:
$ cat file1
SAMD11 NM_152486.2 intronic
SAMD11 NM_152486.2 intronic
SAMD11 NM_152486.2 intronic
SAMD11|NOC2L NM_152486.2|NM_015658.3 downstream|intronic
SAMD11|NOC2L NM_152486.2|NM_015658.3 downstream|intronic
PLOD1 NM_000302.3 exonic
PLOD1 NM_000302.3 exonic
PLOD1 NM_000302.3 exonic
PLOD1 NM_000302.3 intronic

---------- Post updated Jun 10th, 2014 at 12:06 AM ---------- Previous update was Jun 9th, 2014 at 11:55 PM ----------

Resulting
Code:
SAMD11 NM_152486.2 intronic
SAMD11 NM_152486.2 intronic
SAMD11 NM_152486.2 intronic
SAMD11|NOC2L NM_152486.2|NM_015658.3 downstream|intronic
SAMD11|NOC2L NM_152486.2|NM_015658.3 downstream|intronic
PLOD1 NM_000302.3 exonic PLOD1, LH1, LLH, EDS6|Ehlers-Danlos syndrome, type VI, 225400 (3)
PLOD1 NM_000302.3 exonic PLOD1, LH1, LLH, EDS6|Ehlers-Danlos syndrome, type VI, 225400 (3)
PLOD1 NM_000302.3 exonic PLOD1, LH1, LLH, EDS6|Ehlers-Danlos syndrome, type VI, 225400 (3)
PLOD1 NM_000302.3 intronic PLOD1, LH1, LLH, EDS6|Ehlers-Danlos syndrome, type VI, 225400 (3)

This User Gave Thanks to Akshay Hegde For This Post:
winkleman
 

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LEARN ABOUT OSX

locale::codes::langfam

Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME

       Locale::Codes::LangFam - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangFam;

	  $lext = code2langfam('apa');		       # $lext gets 'Apache languages'
	  $code = langfam2code('Apache languages');    # $code gets 'apa'

	  @codes   = all_langfam_codes();
	  @names   = all_langfam_names();

DESCRIPTION

       The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
       ISO 639-5.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
       language family codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
       constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langfam('apa','alpha');
	  $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.

	   This is the default code set.

ROUTINES

       code2langfam ( CODE [,CODESET] )
       langfam2code ( NAME [,CODESET] )
       langfam_code2code ( CODE ,CODESET ,CODESET2 )
       all_langfam_codes ( [CODESET] )
       all_langfam_names ( [CODESET] )
       Locale::Codes::LangFam::rename_langfam  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangFam::add_langfam  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangFam::delete_langfam  ( CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangFam::delete_langfam_alias  ( NAME )
       Locale::Codes::LangFam::rename_langfam_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::delete_langfam_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.loc.gov/standards/iso639-5/id.php
	   ISO 639-5 .

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2012 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.2							    2012-10-11					       Locale::Codes::LangFam(3pm)
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