I have a very large file (10,000,000 lines), that contains a sample id and a property of that sample. I have another file that contains around 1,000,000 lines with sample ids that I want to remove from the original file (create a new file without these lines).
I know how to do this in Perl, but it... (9 Replies)
Dear all,
I need to search multiple patterns and then I need to print their respective next lines. For an example, in the below table, I will look for 3 different patterns :
1) # ATC_Codes:
2) # Generic_Name:
3) # Drug_Target_1_Gene_Name:
#BEGIN_DRUGCARD DB00001
# AHFS_Codes:... (3 Replies)
I have two files. The first containing a header and six columns of data.
Example file 1:
Number SNP ID dbSNP RS ID Chromosome Result_Call Physical Position
787066 SNP_A-8575395 RS6650104 1 NOCALL 564477
786872 SNP_A-8575125 RS10458597 1 AA ... (13 Replies)
I need to print out sections (varying numbers of lines) of a file between patterns. That alone is easy enough: sed -n '/START/,/STOP/' I also need the 3 lines BEFORE the start pattern. That alone is easy enough: grep -B3 START But I can't seem to combine the two so that I get everything between the... (2 Replies)
Hi,
I want to print only lines (green-italic lines) in between first and last strings in column 9.
there are different number of lines between each strings.
10 AUGUSTUS exon 4558 4669 . - . 10.g1
10 AUGUSTUS exon 8771 8889 . ... (6 Replies)
Hi Gurus,
I have a requirement where I need to display all lines between 2 patterns except the line where the first pattern in it. I tried the following command using awk but it is printing all lines except the lines where the 2 patterns exist.
awk '/TRANSF_/{ P=1; next } /Busy/ {exit} P'... (9 Replies)
Hi
I need to egrep patterns in a file and limit number of matches to print for each matched pattern.
-m10 option is not working out in my sun solaris 5.10
Please guide me the options to achieve.
if i do head -10 , i wont be getting all pattern match results as output since for a... (10 Replies)
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
Hi, I need to print lines which are matching with start pattern "SELECT" and END PATTERN ";" and only select the last "select" statement including the ";" .
I have attached sample input file and the desired input should be as:
INPUT FORMAT:
SELECT
ABCD,
DEFGH,
DFGHJ,
JKLMN,
AXCVB,... (5 Replies)
Discussion started by: nani2019
5 Replies
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comm
comm(1) General Commands Manual comm(1)NAME
comm - select or reject lines common to two sorted files
SYNOPSIS
file1 file2
DESCRIPTION
comm reads file1 and file2, which should be ordered in increasing collating sequence (see sort(1) and Environment Variables below), and
produces a three-column output:
Column 1: Lines that appear only in file1,
Column 2: Lines that appear only in file2,
Column 3: Lines that appear in both files.
If is used for file1 or file2, the standard input is used.
Options 1, 2, or 3 suppress printing of the corresponding column. Thus prints only the lines common to the two files; prints only lines in
the first file but not in the second; does nothing useful.
EXTERNAL INFLUENCES
Environment Variables
determines the collating sequence expects from the input files.
determines the language in which messages are displayed.
If is not specified in the environment or is set to the empty string, the value of determines the language in which messages are displayed.
If is not specified in the environment or is set to the empty string, the value of is used as a default. If is not specified or is set to
the empty string, a default of ``C'' (see lang(5)) is used instead of If any internationalization variable contains an invalid setting,
behaves as if all internationalization variables are set to ``C''. See environ(5).
International Code Set Support
Single- and multi-byte character code sets are supported.
EXAMPLES
The following examples assume that and have been ordered in the collating sequence defined by the or environment variable.
Print all lines common to and (in other words, print column 3):
Print all lines that appear in but not in (in other words, print column 1):
Print all lines that appear in but not in (in other words, print column 2):
SEE ALSO cmp(1), diff(1), sdiff(1), sort(1), uniq(1).
STANDARDS CONFORMANCE comm(1)