OK I did not want to go to much into details... So I want to use whose variables to write to the new text file e.g. out_PyMOL_angles_{$pdbid}.txt (which will be actually a PyMOL script to calculate structural properties in the protein e.g. angle between two helices) such as:
But with the above part I am fine.
I just need to set/assign all the values from the original .txt file into unique variables:
Dear all,
I am novice in C+= programing. I would like to seek help in one of the progra. Here it is, I have txt file which has the data as following order
varA varB
-21 0
-21.2 3, 4, 5, 6
-21.4 45, 65, 87, 98, 98
-22.0 345677, 349887, 98766, 877654, 987543
-23.0 76549,... (17 Replies)
I'm having trouble with a simple piece of code.
IFS=,
echo "1,2,3,4,5,6,7,8" | while read x y
do
echo "x=$x"
echo "y=$y"
done
I'm hoping for
x=1
y=2
x=3
y=4
.
.
.
but I'm getting
x=1 (3 Replies)
I have a file of lines with the following format:
AACCCGTAGATCCGAACTTGTG ACCCGTAGATCCGAACTTGTG CCGTAGATCCGAACTTGTG CGTAGATCCGAACTTGT I want to give a header to each line, using awk, where the header is equal to the line that follows, like this:
>AACCCGTAGATCCGAACTTGTG ... (2 Replies)
Hey everyone,
I have a bunch of lines with values in field 4 that I am interested in.
If these values are between 1 and 3 I want it to count all these values to all be counted together and then have the computer print out
LOW and the number of lines with those values in between 1 and 3,... (2 Replies)
I have a file containing multiple values, some of them are pipe separated which are to be read as separate values and some of them are single value all are these need to store in variables.
I need to read this file which is an input to my script
Config.txt
file name, first path, second... (7 Replies)
Looking for a little help here.
I have 1000's of text files within a multiple folders.
YYYY/
/MM
/1000's Files
Eg.
2014/01/1000 files
2014/02/1237 files
2014/03/1400 files
There are folders for each year and each month, and within each monthly folder there are... (4 Replies)
Hi,
I managed to read and print variable as shown in the below code.
table_name=table1,table2,table3
i=0
IFS=","
for i in $table_name
do
echo $i
done
Is there a way how I can read more than one variable. For example I need to read 2 variables and populate the output... (6 Replies)
Hello Gurus,
I have a multiple pipe separated files which have records going over multiple Lines. End of line separator is \n and records going over multiple lines have <CR> as separator. below is example from one file.
1|ABC DEF|100|10
2|PQ
RS
T|200|20
3| UVWXYZ|300|30
4| GHIJKL|400|40... (7 Replies)
I have requirement to split below file (sample.csv) into multiple files by using the unique columns (first 3 are unique columns)
sample.csv
123|22|56789|ABCDEF|12AB34|2019-07-10|2019-07-10|443.3400|1|1
123|12|5679|BCDEFG|34CD56|2019-07-10|2019-07-10|896.7200|1|2... (3 Replies)
Discussion started by: RVSP
3 Replies
LEARN ABOUT DEBIAN
bp_revtrans-motif
BP_REVTRANS-MOTIF(1p) User Contributed Perl Documentation BP_REVTRANS-MOTIF(1p)NAME
revtrans-motif - Reverse translate a Profam-like protein motif
VERSION
Version 0.01
SYNOPSIS
From a file:
revtrans-motif.pl -i motifs.txt
Using pipes:
revtrans-motif.pl < motifs.txt > output.txt
Using interactively at the command prompt:
$ revtrans-motif.pl
MAAEEL[VIKP]
1. ATGGCNGCNGARGARYTNVHN
[^P]H(IW){2,3}
2. NDNCAY(ATHTGG){2,3}
DESCRIPTION
This script takes a protein motif as input and returns a degenerate oligonucleotide sequence corresponding to it. The main reason for doing
this is to design degenerate primers that amplify a given sequence pattern.
The input motif consists of a string of one-letter residues, with any of the following syntactic elements:
[...] : Redundant position.
A position in which more than one residue is allowed. Example:
[TS]YW[RKSD]
^^ ^^^^
[^...] : Negated position.
A position in which any residue is allowed, saved for those between brackets. Example:
[^PW]MK[LAE]
^^
(...){n,m,...} : Repeated motif.
A motif that is repeated n or m times. It can have any of the previous syntactic elements. Example:
A[SN]C(TXX){2,4,8}
^^^
The allowed letters are those that correspond to the 20 natural aminoacids, plus:
B = N + D
Z = Q + E
X = All
OPTIONS -i input-file:
A file with a list of motifs to reverse translate.
-h
Display this help message.
AUTHOR
Bruno Vecchi, "vecchi.b at gmail.com"
BUGS
Please report any bugs or feature requests to "vecchi.b at gmail.com"
COPYRIGHT & LICENSE
Copyright 2009 Bruno Vecchi, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.14.2 2012-03-02 BP_REVTRANS-MOTIF(1p)