OK I did not want to go to much into details... So I want to use whose variables to write to the new text file e.g. out_PyMOL_angles_{$pdbid}.txt (which will be actually a PyMOL script to calculate structural properties in the protein e.g. angle between two helices) such as:
But with the above part I am fine.
I just need to set/assign all the values from the original .txt file into unique variables:
Dear all,
I am novice in C+= programing. I would like to seek help in one of the progra. Here it is, I have txt file which has the data as following order
varA varB
-21 0
-21.2 3, 4, 5, 6
-21.4 45, 65, 87, 98, 98
-22.0 345677, 349887, 98766, 877654, 987543
-23.0 76549,... (17 Replies)
I'm having trouble with a simple piece of code.
IFS=,
echo "1,2,3,4,5,6,7,8" | while read x y
do
echo "x=$x"
echo "y=$y"
done
I'm hoping for
x=1
y=2
x=3
y=4
.
.
.
but I'm getting
x=1 (3 Replies)
I have a file of lines with the following format:
AACCCGTAGATCCGAACTTGTG ACCCGTAGATCCGAACTTGTG CCGTAGATCCGAACTTGTG CGTAGATCCGAACTTGT I want to give a header to each line, using awk, where the header is equal to the line that follows, like this:
>AACCCGTAGATCCGAACTTGTG ... (2 Replies)
Hey everyone,
I have a bunch of lines with values in field 4 that I am interested in.
If these values are between 1 and 3 I want it to count all these values to all be counted together and then have the computer print out
LOW and the number of lines with those values in between 1 and 3,... (2 Replies)
I have a file containing multiple values, some of them are pipe separated which are to be read as separate values and some of them are single value all are these need to store in variables.
I need to read this file which is an input to my script
Config.txt
file name, first path, second... (7 Replies)
Looking for a little help here.
I have 1000's of text files within a multiple folders.
YYYY/
/MM
/1000's Files
Eg.
2014/01/1000 files
2014/02/1237 files
2014/03/1400 files
There are folders for each year and each month, and within each monthly folder there are... (4 Replies)
Hi,
I managed to read and print variable as shown in the below code.
table_name=table1,table2,table3
i=0
IFS=","
for i in $table_name
do
echo $i
done
Is there a way how I can read more than one variable. For example I need to read 2 variables and populate the output... (6 Replies)
Hello Gurus,
I have a multiple pipe separated files which have records going over multiple Lines. End of line separator is \n and records going over multiple lines have <CR> as separator. below is example from one file.
1|ABC DEF|100|10
2|PQ
RS
T|200|20
3| UVWXYZ|300|30
4| GHIJKL|400|40... (7 Replies)
I have requirement to split below file (sample.csv) into multiple files by using the unique columns (first 3 are unique columns)
sample.csv
123|22|56789|ABCDEF|12AB34|2019-07-10|2019-07-10|443.3400|1|1
123|12|5679|BCDEFG|34CD56|2019-07-10|2019-07-10|896.7200|1|2... (3 Replies)
Discussion started by: RVSP
3 Replies
LEARN ABOUT DEBIAN
column
COLUMN(1) BSD General Commands Manual COLUMN(1)NAME
column -- columnate lists
SYNOPSIS
column [-entx] [-c columns] [-s sep] [file ...]
DESCRIPTION
The column utility formats its input into multiple columns. Rows are filled before columns. Input is taken from file operands, or, by
default, from the standard input. Empty lines are ignored unless the -e option is used.
The options are as follows:
-c Output is formatted for a display columns wide.
-s Specify a set of characters to be used to delimit columns for the -t option.
-t Determine the number of columns the input contains and create a table. Columns are delimited with whitespace, by default, or with
the characters supplied using the -s option. Useful for pretty-printing displays.
-x Fill columns before filling rows.
-n By default, the column command will merge multiple adjacent delimiters into a single delimiter when using the -t option; this option
disables that behavior. This option is a Debian GNU/Linux extension.
-e Do not ignore empty lines.
ENVIRONMENT
The COLUMNS, LANG, LC_ALL and LC_CTYPE environment variables affect the execution of column as described in environ(7).
EXIT STATUS
The column utility exits 0 on success, and >0 if an error occurs.
EXAMPLES
(printf "PERM LINKS OWNER GROUP SIZE MONTH DAY " ;
printf "HH:MM/YEAR NAME
" ;
ls -l | sed 1d) | column -t
SEE ALSO colrm(1), ls(1), paste(1), sort(1)HISTORY
The column command appeared in 4.3BSD-Reno.
BUGS
Input lines are limited to LINE_MAX (2048) bytes in length.
BSD July 29, 2004 BSD