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Top Forums Shell Programming and Scripting Help with merge and remove duplicates Post 302896850 by roy121 on Wednesday 9th of April 2014 01:51:34 PM
Old 04-09-2014
Linux Help with merge and remove duplicates

Hi all,

I need some help to remove duplicates from a file before merging.

I have got 2 files:

file1 has data in format
4300 23456
4301 2357

the 4 byte values on the right hand side is uniq, and are not repeated anywhere in the file

file 2 has data in same format but is not in sorted order

3999 2349
4305 1234
4300 3459

the script i am using is not able to remove duplicate values after spaces, and the output is coming in the following manner:-

3999 2349
4300 233445569
4301 2357
4305 1234

The expected output is:-
3999 2349
4300 234569
4301 2357
4305 1234

The script i am using is:-
Code:
export INPUT1=File1
export REQ=File2
export OUTPUT1=Final_File


sort $INPUT1 $REQ |
           awk     '$1 == SV1              {SV2=SV2  $2;next}
           NR>1 && $1 != SV1                {print SV1, SV2}
                                            {SV1=$1;SV2=$2}
           END                             {print  SV1,SV2}
        ' > $OUTPUT1

 

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JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -jn m Join on the mth field of file n. If n is missing, use the mth field in each file. -o list Each output line comprises the fields specifed in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. JOIN(1)
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