Hi all,
I have a huge csv file with the following format of data,
Num SNPs, 549997
Total SNPs,555352
Num Samples, 157
SNP, SampleID, Allele1, Allele2
A001,AB1,A,A
A002,AB1,A,A
A003,AB1,A,A
...
...
...
I would like to write out a list of unique SNP (column 1). Could you... (3 Replies)
Hi All,
I have a file which is having 3 columns as (string string integer)
a b 1
x y 2
p k 5
y y 4
.....
.....
Question:
I want get the unique value of column 2 in a sorted way(on column 2) and the sum of the 3rd column of the corresponding rows. e.g the above file should return the... (6 Replies)
I have a text file where the second column is a list of numbers going from small to large. I want to extract the rows where the second column is smaller than or equal to 0.0001.
My input:
rs10082730 9e-08 12 46002702
rs2544081 1e-07 12 46015487
rs1425136 1e-06 7 35396742
rs2712590... (1 Reply)
I have a space delimited text file. I want to extract rows where the third column has 0 as a value and write those rows into a new space delimited text file. How do I go about doing that? Thanks! (2 Replies)
I have a file containing data like so:
2012-01-02 GREEN 4
2012-01-02 GREEN 6
2012-01-02 GREEN 7
2012-01-02 BLUE 4
2012-01-02 BLUE 3
2012-01-02 GREEN 4
2012-01-02 RED 4
2012-01-02 RED 8
2012-01-02 GREEN 4
2012-01-02 YELLOW 5
2012-01-02 YELLOW 2
I can't always predict what the... (4 Replies)
Hi all,
I am new to shell script.I need your help to write a shell script.
I need to write a shell script to extract data from a .csv file where columns are ',' separated.
The file has 5 columns having values say column 1,column 2.....column 5 as below along with their valuesm.... (3 Replies)
cat sample.csv
ID,Name,no
1,AAA,1
2,BBB,1
3,AAA,1
4,BBB,1
cut -d',' -f2 sample.csv | sort | uniq
this gives only the 2nd column values
Name
AAA
BBB
How to I get all the columns of CSV along with this? (1 Reply)
Hi would like to ask you guys any advise regarding my problem
I have this kind of data
file.txt
111111111,20
111111111,50
222222222,70
333333333,40
444444444,10
444444444,20
I need to get this
file1.txt
111111111,70
222222222,70
333333333,40
444444444,30
using this code I can... (6 Replies)
Hi All,
Does anyone have any suggestions/examples of how i could show only lines where the first field is not duplicated. If the first field is listed more than once it shouldnt be shown even if the other columns make it unique.
Example file :
876,RIBDA,EC2
876,RIBDH,EX7
877,RIBDF,E28... (4 Replies)
What is an efficient way of counting the number of unique values in a 400 column by 1000 row array and outputting the counts per column, assuming the unique values in the array are:
A, B, C, D
In other words the output should look like: Value COL1 COL2 COL3
A 50 51 52... (16 Replies)
Discussion started by: Geneanalyst
16 Replies
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sh(1) General Commands Manual sh(1)NAME
sh - overview of various system shells
SYNOPSIS
POSIX Shell
option] ... string] [arg ...]
option] ... string] [arg ...]
Korn Shell
option] ... string] [arg ...]
option] ... string] [arg ...]
C Shell
[command_file] [argument_list ...]
Key Shell
DESCRIPTION
Remarks
The POSIX .2 standard requires that, on a POSIX-compliant system, executing the command activates the POSIX shell (located in file on HP-UX
systems), and executing the command produces an on-line manual entry that displays the syntax of the POSIX shell command-line.
However, the command has historically been associated with the conventional Bourne shell, which could confuse some users. To meet stan-
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The Bourne shell is removed from the system starting with HP-UX 11i Version 1.5. Please use the POSIX shell as an alternative.
Shell Descriptions
The HP-UX operating system supports the following shells:
POSIX-conforming command programming language and command interpreter
residing in file Can execute commands read from a terminal or a file. This shell conforms to current POSIX standards in
effect at the time the HP-UX system release was introduced, and is similar to the Korn shell in many respects. Similar in
many respects to the Korn shell, the POSIX shell contains a history mechanism, supports job control, and provides various
other useful features.
Korn-shell command programming language and commands interpreter
residing in file Can execute commands read from a terminal or a file. This shell, like the POSIX shell, contains a his-
tory mechanism, supports job control, and provides various other useful features.
A command language interpreter
that incorporates a command history buffer, C-language-like syntax, and job control facilities.
Restricted version of the POSIX shell command interpreter.
Sets up a login name and execution environment whose capabilities are more controlled (restricted) than normal user
shells.
restricted version of the Korn-shell command interpreter
Sets up a login name and execution environment whose capabilities are more controlled (restricted) than normal user
shells.
An extension of the standard Korn Shell
that uses hierarchical softkey menus and context-sensitive help.
+--------------+--------------------+
| To obtain: | Use the command: |
+--------------+--------------------+
| POSIX Shell | /usr/bin/sh ... |
| Korn Shell | /usr/bin/ksh ... |
| C Shell | /usr/bin/csh ... |
| Key Shell | /usr/bin/keysh |
+--------------+--------------------+
These shells can also be the default invocation, depending on the entry in the file. See also chsh(1).
WARNINGS
Many manual entries contain descriptions of shell behavior or describe program or application behavior similar to ``the shell'' with a ref-
erence to ``see sh(1)''.
SEE ALSO
For more information on the various individual shells, see:
keysh(1) Key Shell description.
ksh(1) Korn Shell description.
sh-posix(1) POSIX Shell description.
csh(1) C Shell description.
sh(1)