Can anyone help me with the following:
I need to traverse subdirectories to create a list of files with the pathname. For example, here's what I get with a simple ls -alR command:
/MAIN/data/30007390 dte2>>ls -alR
.:
total 2
drwxrwx--- 4 ecfadmin staff 96 Oct 24 18:35 .
... (2 Replies)
Dear Techs,
In the past on a different box (HP) I use to be able to complete something I was typing by entering a portion of the filename in the pwd and I would hit the Esc key and it would match the rest of the filename. I did this without understanding how it was setup.
Now I am on a new... (1 Reply)
Hi Canone please provide me solution how can achieve the result below:
File1.txt
$
sweet appleŁ1
scotish
green
$
This is a test1
$
sweet mangoŁ2
asia
yellow
$
This is a test 2
$
sweet apple red (there is no pound symbol here)
germany
green (1 Reply)
Hi,
Does anyone know how to make BASH provide a list of possible completions on the first tab, and then start cycling through the possibilites on the next tab?
Right now this is what I have in my .bashrc:
bind "set show-all-if-ambiguous on"
bind \\C-o:menu-complete
This allows... (0 Replies)
Hi,
I want to split before reading the complete line as the line is very big and its throwing out of memory. can you suggest.
when i say
#cat $inputFile | while read eachLine
and use the eachLine to split its throwing out of memory as the line size is more than 10000000 characters.
Can you... (1 Reply)
Hi,
I am reading data from a variable which has spaces in it. I want to get the data after first space, i.e. if my data line is "My Name is Ashish...", I want the data returned as "Name is Ashish". I am using #!/bin/sh shell. Please help me with the code to read the complete data after first... (8 Replies)
Hi
Is there any way GREP command can return word and not complete line.
My file has following data:
Hello Everyone I am NitinrajSrivastava
Hi Friends Welcome VrajSrivastava
I am using grep 'raj' which is returning me complete line.However I want only the word having keyword 'raj'.
Required... (11 Replies)
Hello all,
I have following line and want to search the exact match in text file.
30 6 * * * /data/abc/abc.ksh -f xya.sql -xyz@email -x -c -g
I have tried it many ways like grep -W ,sed,etc.... but could not find the solution.
The above line i am storing it in one variable called... (4 Replies)
Hi ,
I have a text file like below
abcd2223232321212121324343
asdsfffhfgfgfhgfhghghghghghgh
dfdfdfgfghfgfgfgfgfgghghghghgh
dfdfdfdfdfdfdfdfdfdfdfdfdfdfdfdf
1234567890sasasasfdfbffghffhf
abcd222323232121212abcdsds
in the above file i need to grep and print the lines if 14th to 18th... (4 Replies)
Discussion started by: aravindj80
4 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)