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Top Forums Shell Programming and Scripting [Solved] awk compare two different columns of two files and print all from both file Post 302884308 by Akshay Hegde on Monday 20th of January 2014 03:08:07 AM
Old 01-20-2014
Quote:
Originally Posted by justinjj
Hi,
I want to compare two columns from file1 with another two column of file2 and print matched and unmatched column like this

File1
1 rs1 abc
3 rs4 xyz
1 rs3 stu

File2
1 kkk rs1 AA 10
1 aaa rs2 DD 20
1 ccc rs3 EE 30
1 nnn rs4 RR 40

OUTPUT should be like this
1 kkk rs1 AA 10 abc
1 aaa rs2 DD 20 NA
1 ccc rs3 EE 30 stu
1 nnn rs4 RR 40 NA

column 1 and 2 from file1 should match with column 1 and 3 of the file2 and print file2 with column 3 of matched file1.
Thanks much.



Try :


Code:
$ awk 'FNR==NR{A[$1 FS $2]=$3;next}{print ($1 FS $3 in A ) ? $0 OFS A[$1 FS $3] : $0 OFS "NA"}' file1 file2

This User Gave Thanks to Akshay Hegde For This Post:
 

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comm(1) 						      General Commands Manual							   comm(1)

NAME
comm - select or reject lines common to two sorted files SYNOPSIS
file1 file2 DESCRIPTION
comm reads file1 and file2, which should be ordered in increasing collating sequence (see sort(1) and Environment Variables below), and produces a three-column output: Column 1: Lines that appear only in file1, Column 2: Lines that appear only in file2, Column 3: Lines that appear in both files. If is used for file1 or file2, the standard input is used. Options 1, 2, or 3 suppress printing of the corresponding column. Thus prints only the lines common to the two files; prints only lines in the first file but not in the second; does nothing useful. EXTERNAL INFLUENCES
Environment Variables determines the collating sequence expects from the input files. determines the language in which messages are displayed. If is not specified in the environment or is set to the empty string, the value of determines the language in which messages are displayed. If is not specified in the environment or is set to the empty string, the value of is used as a default. If is not specified or is set to the empty string, a default of ``C'' (see lang(5)) is used instead of If any internationalization variable contains an invalid setting, behaves as if all internationalization variables are set to ``C''. See environ(5). International Code Set Support Single- and multi-byte character code sets are supported. EXAMPLES
The following examples assume that and have been ordered in the collating sequence defined by the or environment variable. Print all lines common to and (in other words, print column 3): Print all lines that appear in but not in (in other words, print column 1): Print all lines that appear in but not in (in other words, print column 2): SEE ALSO
cmp(1), diff(1), sdiff(1), sort(1), uniq(1). STANDARDS CONFORMANCE
comm(1)
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