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Top Forums Shell Programming and Scripting Converting text files to xls through awk script for specific data format Post 302883007 by Akshay Hegde on Friday 10th of January 2014 11:25:13 AM
Old 01-10-2014
Assuming you want to extract numeric value from line with a pattern Query and Score..

Code:
awk '
function parse(){
                   gsub(/[[:alpha:]]|[-,=]/,x)
                   $0=$0;$1=$1
                   q = q ? q OFS $0 : $0
                } 
           NR==1{
                 print "Serial", "Query start", "Query End", "target start", "target end", "Score", "E", "P", "GC"
                }      
            /^>/{
                   s=$0
                   next
                }
/Query/||/Score/{
                   parse()
                if(++i==2){
                                print s,q
                                q=s=i=""
                          }          
                }
    ' OFS="\t" file

Code:
Serial    Query start    Query End    target start    target end    Score    E    P    GC
>gi|1234|ref|    1    65    1677    1733    8.38    0.6529    0.0001513    46
>gi|54367|ref|    1    65    6780    6812    8.13    0.7692    0.0001782    36

This User Gave Thanks to Akshay Hegde For This Post:
 

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Search::GIN::Query::Class(3pm)				User Contributed Perl Documentation			    Search::GIN::Query::Class(3pm)

NAME
Search::GIN::Query::Class - Create class-based GIN queries VERSION
version 0.08 SYNOPSIS
use Search::GIN::Query::Class; my $query = Search::GIN::Query::Class->new( class => 'Person', ); DESCRIPTION
Creates a class-based GIN query that can be used to search records in a storage. This is a ready-to-use query that uses class definitions (specifically "class", "does" and "blessed") to search through the storage. METHODS
/SUBROUTINES new Creates a new query. ATTRIBUTES
class The class of the object you want to find. my $query = Search::GIN::Query::Class->new( class => 'Person', ); does A role consumed by the object you want to find. my $query = Search::GIN::Query::Class->new( does => 'TheMonkey', ); blessed The name of the package that the object is blessed into. my $query = Search::GIN::Query::Class->new( blessed => 'Person', ); AUTHOR
Yuval Kogman <nothingmuch@cpan.org> COPYRIGHT AND LICENSE
This software is copyright (c) 2010 by Yuval Kogman, Infinity Interactive. This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself. perl v5.10.1 2011-01-31 Search::GIN::Query::Class(3pm)
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