Extract the part of sequences from a file Post: 302881037

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Extract a part of file name

Hi, I want to extract a part of filename and pass it as a parameter to one of the scripts. Could someone help. File name:- NLL_NAM_XXXXX.XXXXXXX_1_1.txt. Here i have to extract only XXXXX.XXXXXXX and the position will be constant. that means that i have to extract some n characters from...

2. Shell Programming and Scripting

How to extract certain part of log file?

Hi there, I'm having some problem with UNIX scripting (ksh), perhaps somebody can help me out? For example: ------------ Sample content of my log file (text file): -------------------------------------- File1: .... info_1 ... info_2 ... info_3 ... File2: .... info_1 ... info_2 ......

3. Shell Programming and Scripting

extract part of text file

I need to extract the following lines from this text and put it in different files. From xxxx@gmail.com Thu Jun 10 21:15:46 2010 Return-Path: <xxxxx@gmail.com> X-Original-To: xxx@localhost Delivered-To:xxxx@localhost Received: from ubuntu (localhost ) by ubuntu (Postfix) with ESMTP...

4. Shell Programming and Scripting

Extract sequences based on the list

Hi, I have a file with more than 28000 records and it looks like below.. >mm10_refflat_ABCD range=chr1:1234567-2345678 tgtgcacactacacatgactagtacatgactagac....so on >mm10_refflat_BCD range=chr1:3234567-4545678... tgtgcacactacacatgactagtatgtgcacactacacatgactagta . . . . . so on ...

5. Shell Programming and Scripting

Extract length wise sequences from fastq file

I have a fastq file from small RNA sequencing with sequence lengths between 15 - 30. I wanted to filter sequence lengths between 21-25 and write to another fastq file. how can i do that?

6. Shell Programming and Scripting

Extract part of file

Hello All, I need to extract part of a file into a new file My file is Define schema xxxxxx Insert into table ( a ,b ,c ,d ) values ( 1, 2, 3,

7. Shell Programming and Scripting

Extract sequences of bytes from binary for differents blocks

Hello to all, I would like to search sequences of bytes inside big binary file. The bin file contains blocks of information, each block begins is estructured as follow: 1- Each block begins with the hex 32 (1 byte) and ends with FF. After the FF of the last block, it follows 33. 2- Next...

8. Shell Programming and Scripting

Extract sequences from a FASTA file based on another file

9. Programming

Extract part of an archive to a different file

I need to save part of a file to a different one, start and end offset bytes are provided by two counters in long format. If the difference is big, how should I do it to prevent buffer overflow in java?

10. Shell Programming and Scripting

Extract a part of variable/line content in a file

I have a variable and assigned the following values ***XYZ_201519_20150929140642_20150929140644_211_0_0_211 I need to read this variable from backward and stop read when I get first underscore (_) In this scenario I should get 211 Thanks Kris

LEARN ABOUT REDHAT

strip

STRIP(1)						       GNU Development Tools							  STRIP(1)

NAME

       strip - Discard symbols from object files.

SYNOPSIS

       strip [-F bfdname |--target=bfdname ]
	     [-I bfdname |--input-target=bfdname ]
	     [-O bfdname |--output-target=bfdname ]
	     [-s|--strip-all] [-S|-g|-d|--strip-debug]
	     [-K symbolname |--keep-symbol=symbolname ]
	     [-N symbolname |--strip-symbol=symbolname ]
	     [-x|--discard-all ] [-X |--discard-locals]
	     [-R sectionname |--remove-section=sectionname ]
	     [-o file ] [-p|--preserve-dates]
	     [-v |--verbose]  [-V|--version] [--help]
	     objfile...

DESCRIPTION

       GNU strip discards all symbols from object files objfile.  The list of object files may include archives.  At least one object file must be
       given.

       strip modifies the files named in its argument, rather than writing modified copies under different names.

OPTIONS

       -F bfdname
       --target=bfdname
	   Treat the original objfile as a file with the object code format bfdname, and rewrite it in the same format.

       --help
	   Show a summary of the options to strip and exit.

       -I bfdname
       --input-target=bfdname
	   Treat the original objfile as a file with the object code format bfdname.

       -O bfdname
       --output-target=bfdname
	   Replace objfile with a file in the output format bfdname.

       -R sectionname
       --remove-section=sectionname
	   Remove any section named sectionname from the output file.  This option may be given more than once.  Note that using this option inap-
	   propriately may make the output file unusable.

       -s
       --strip-all
	   Remove all symbols.

       -g
       -S
       -d
       --strip-debug
	   Remove debugging symbols only.

       --strip-unneeded
	   Remove all symbols that are not needed for relocation processing.

       -K symbolname
       --keep-symbol=symbolname
	   Keep only symbol symbolname from the source file.  This option may be given more than once.

       -N symbolname
       --strip-symbol=symbolname
	   Remove  symbol  symbolname  from the source file. This option may be given more than once, and may be combined with strip options other
	   than -K.

       -o file
	   Put the stripped output in file, rather than replacing the existing file.  When this argument is used, only one objfile argument may be
	   specified.

       -p
       --preserve-dates
	   Preserve the access and modification dates of the file.

       -x
       --discard-all
	   Remove non-global symbols.

       -X
       --discard-locals
	   Remove compiler-generated local symbols.  (These usually start with L or ..)

       -V
       --version
	   Show the version number for strip.

       -v
       --verbose
	   Verbose output: list all object files modified.  In the case of archives, strip -v lists all members of the archive.

SEE ALSO

       the Info entries for binutils.

COPYRIGHT

       Copyright (c) 1991, 92, 93, 94, 95, 96, 97, 98, 99, 2000, 2001, 2002 Free Software Foundation, Inc.

       Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.1 or
       any later version published by the Free Software Foundation; with no Invariant Sections, with no Front-Cover Texts, and with no	Back-Cover
       Texts.  A copy of the license is included in the section entitled "GNU Free Documentation License".

binutils-2.13.90.0.18						    2003-02-24								  STRIP(1)

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Extract a part of file name

Discussion started by: dnat

2. Shell Programming and Scripting

How to extract certain part of log file?

Discussion started by: superHonda123

3. Shell Programming and Scripting

extract part of text file

Discussion started by: waxo

4. Shell Programming and Scripting

Extract sequences based on the list

Discussion started by: Diya123