dear all,
I have trouble handling the files with the # (ie:
). I try deleting them several ways, but get failed everytime.
Please let me know how to a.) delete them b.) how to get rid of creation of these files.
I have a script with dynamic hash of hashes , and I want to print the entire hash (with all other hashes).
Itried to do it recursively by checking if the current key is a hash and if yes call the current function again with refference to the sub hash.
Most of the printing seems to be OK but in... (1 Reply)
Hi All
IN HPUX 11
How to delete an unwanted "core" file with a single command
which is being generated in different locations of the system
the command should be able to free up the space occupied by all "core" file
which is present in different folders and filesytems in a system
... (5 Replies)
Can Someone explain me why even using Tie::IxHash I can not get the output data in the same order that it was inserted? See code below.
#!/usr/bin/perl
use warnings;
use Tie::IxHash;
use strict;
tie (my %programs, "Tie::IxHash");
while (my $line = <DATA>) {
chomp $line;
my(... (1 Reply)
Hi,
In Perl, is it possible to use a range of numbers with '..' as a key in a hash?
Something in like:
%hash = (
'768..1536' => '1G',
'1537..2560' => '2G'
);
That is, the range operation is evaluated, and all members of the range are... (3 Replies)
HI,
My input file contains below data:
DFHDR
12345110
1,200
2,-100
1,100
2,123
12345110
1,300
2,200
DFTLR
In the above data, the first line and last lines should be remove as well as the lines in which contains 110 as position(6,7,8 position) should also be removed,
How we... (0 Replies)
Hi,
I have an hashes of hash, where hash is dynamic, it can be n number of hash. i need to compare data_count values of all .
my %result (
$abc => {
'data_count' => '10',
'ID' => 'ABC122',
}
$def => {
'data_count' => '20',
'ID' => 'defASe',
... (1 Reply)
Hi,
I have a script similar to this
#!/bin/ksh
cd /orcl/bir/eod_badfiles
find ./ -type f -name "*.csv" -mtime +6 -exec rm -f {} \;
find ./ -type f -name "*.bad" -mtime +6 -exec rm -f {} \;
cd /orcl/bir
find ./ -type f -name "*.log" -mtime +6 -exec rm -f {} \;
This was working fine in one... (5 Replies)
Hi, I have a hash of hash where it has
name, activities and count
i have data like this -
$result->{$name}->{$activities} = $value;
content of that are -
name - robert tom cat peter
activities - running, eating, sleeping , drinking, work
i need to print output as below
... (3 Replies)
Discussion started by: asak
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)