Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: awk reformat file
Top Forums Shell Programming and Scripting awk reformat file Post 302878310 by Akshay Hegde on Thursday 5th of December 2013 01:09:16 PM
Old 12-05-2013
Try:

Code:
$ awk '!/^>/{gsub(/[[:space:]]/,x)}{printf /^>/ ? NR == 1 ? $0 RS : RS $0 RS : $0 }END{printf RS}' file

Code:
>YAL069W-1.334 Putative promoter
CCACACCACACCCACACACCACACCACACCCACACACACAACAGCCCTAATCTAACCC
>YAL068C-7235.2170 Putative ABC sequence
TACGAGAATAATTTACGTAAATGAAGTTTATATATAAA
>gi|31044174|gb|AY143560.1| Tintinnopsis
GAAACTGCGAATGGCTCATTAAAATAATTCTAGAGCTAATACATGCTGAGCATCTGCTATTGTGGTGACTCATAGT
>gi|31044185|gb|AY143571.1|  
ATTACCCAATCCTGGGCACCACCAG

---edit----
Code:
$ awk '{printf /^>/? NR == 1 ? $0 RS : RS $0 RS : gsub(/[[:space:]]/,x) $0 }END{printf RS}' file -->BUG

Last edited by Akshay Hegde; 12-05-2013 at 03:38 PM.. Reason: to simplify more..
This User Gave Thanks to Akshay Hegde For This Post:
yifangt
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

help reformat data with awk

I am trying to write an awk program to reformat a data table and convert the date to julian time. I have all the individual steps working, but I am having some issues joing them into one program. Can anyone help me out? Here is my code so far: # This is an awk program to convert the dates from... (4 Replies)
Discussion started by: climbak
4 Replies

2. Shell Programming and Scripting

reformat date, awk and sed

The command below is getting me the output I need. awk -F"," ' { if ($6 = 475) print "@@"$3 " " "0000" $10 "0" $1 "00000000" $8}' ${DIR1}${TMPFILE1} | sed -e 's/@@1//g' > ${DIR2}${TPRFILE} Output: 900018732 00004961160200805160000000073719 Now I need to incorporate... (5 Replies)
Discussion started by: mondrar
5 Replies

3. Shell Programming and Scripting

awk to reformat a text file

I am definitely not an expert with awk, and I want to reformat a text file like the following. This is probably a very easy one for an expert out there. I would like to keep the lines in the same order, but move the heading to only be listed once above the lines. This is what the text file... (7 Replies)
Discussion started by: linux4life
7 Replies

4. Shell Programming and Scripting

Reformat MLS Data - Use AWK?

I am helping my wife set up a real estate site and I am starting to integrate MLS listings. We are using a HostGator level 5 VPS running CentOS and have full root and SSH access to the VPS. Thus far I have automated the daily FTP download of listings from our MLS server using a little sh script.... (4 Replies)
Discussion started by: Chicago_Realtor
4 Replies

5. Shell Programming and Scripting

need awk or sed help to reformat output

We have the following output: server1_J00_data_20120711122243 server1_J00_igs_20120711122243 server1_J00_j2ee_20120711122243 server1_J00_sec_20120711122243 server1_J00_data_20120711131819 server1_J00_igs_20120711131819 server1_J00_j2ee_20120711131819 server2_J00_data_20120711122245... (10 Replies)
Discussion started by: ux4me
10 Replies

6. Shell Programming and Scripting

awk to reformat text

I have this input and want output like below, how can I achieve that through awk: Input: CAT1 FRY-01 CAT1 FRY-04 CAT1 DRY-03 CAT1 FRY-02 CAT1 DRY-04 CAT2 FRY-03 CAT2 FRY-02 CAT2 DRY-01 FAT3 DRY-12 FAT3 FRY-06 Output: category CAT1 item FRY-01 (7 Replies)
Discussion started by: aydj
7 Replies

7. Shell Programming and Scripting

Using awk to reformat file output

Hi there. I need to reformat a large file. Here is a sample of the file. NETIK0102_UCS_Boot_a,NETIK0102_UCS_Boot_b 5200 2438 70G 5200 2439 70G NETIK0102_UCS_HBA0_a,NETIK0102_UCS_HBA1_b,NETIK0102_UCS_HBA2_a,NETIK0102_UCS_HBA3_b 2673 19D7 55G 2673 19C0 30G 2673 19F5 120G... (5 Replies)
Discussion started by: kieranfoley
5 Replies

8. Shell Programming and Scripting

Reformat awk output

I need to rearrange the output but i am unable to arrange it to match the format. In the output i need NAME=\"To in the column . Bash: #!/bin/bash cd /cygdrive/c/output/a cat *.txt > output.txt i=/cygdrive/c/output/a/output.csv #echo "NE_Name, Source, Destination, OSPF_AREA_ID"... (4 Replies)
Discussion started by: adgjmpt
4 Replies

9. Shell Programming and Scripting

awk to reformat text file

Howdy. AWK beginner here. I need to reformat a text file in the following format: TTGS08-2014001 6018.00 143563.00 ... (2 Replies)
Discussion started by: c47v3770
2 Replies

10. Shell Programming and Scripting

awk to reformat output if input file is empty, but not if file has data in it

The below awk improved bu @MadeInGermany, works great as long as the input file has data in it in the below format: input chrX 25031028 25031925 chrX:25031028-25031925 ARX 631 18 chrX 25031028 25031925 chrX:25031028-25031925 ARX 632 14... (3 Replies)
Discussion started by: cmccabe
3 Replies

LEARN ABOUT OSX

locale::codes::langext

Locale::Codes::LangExt(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangExt(3pm)

NAME

       Locale::Codes::LangExt - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangExt;

	  $lext = code2langext('acm');		       # $lext gets 'Mesopotamian Arabic'
	  $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm'

	  @codes   = all_langext_codes();
	  @names   = all_langext_names();

DESCRIPTION

       The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in
       the IANA language registry.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
       registry codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or
       a constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langext('acm','alpha');
	  $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic.

	   This is the default code set.

ROUTINES

       code2langext ( CODE [,CODESET] )
       langext2code ( NAME [,CODESET] )
       langext_code2code ( CODE ,CODESET ,CODESET2 )
       all_langext_codes ( [CODESET] )
       all_langext_names ( [CODESET] )
       Locale::Codes::LangExt::rename_langext  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangExt::add_langext  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangExt::delete_langext  ( CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangExt::delete_langext_alias  ( NAME )
       Locale::Codes::LangExt::rename_langext_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::delete_langext_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.iana.org/assignments/language-subtag-registry
	   The IANA language subtag registry.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2012 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.2							    2012-10-11					       Locale::Codes::LangExt(3pm)
All times are GMT -4. The time now is 06:05 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy