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Full Discussion: awk reformat file
Top Forums Shell Programming and Scripting awk reformat file Post 302878310 by Akshay Hegde on Thursday 5th of December 2013 01:09:16 PM
Old 12-05-2013
Try:

Code:
$ awk '!/^>/{gsub(/[[:space:]]/,x)}{printf /^>/ ? NR == 1 ? $0 RS : RS $0 RS : $0 }END{printf RS}' file

Code:
>YAL069W-1.334 Putative promoter
CCACACCACACCCACACACCACACCACACCCACACACACAACAGCCCTAATCTAACCC
>YAL068C-7235.2170 Putative ABC sequence
TACGAGAATAATTTACGTAAATGAAGTTTATATATAAA
>gi|31044174|gb|AY143560.1| Tintinnopsis
GAAACTGCGAATGGCTCATTAAAATAATTCTAGAGCTAATACATGCTGAGCATCTGCTATTGTGGTGACTCATAGT
>gi|31044185|gb|AY143571.1|  
ATTACCCAATCCTGGGCACCACCAG

---edit----
Code:
$ awk '{printf /^>/? NR == 1 ? $0 RS : RS $0 RS : gsub(/[[:space:]]/,x) $0 }END{printf RS}' file -->BUG


Last edited by Akshay Hegde; 12-05-2013 at 03:38 PM.. Reason: to simplify more..
This User Gave Thanks to Akshay Hegde For This Post:
 

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IRSEND(1)								FSF								 IRSEND(1)

NAME
irsend - basic LIRC program to send infra-red commands SYNOPSIS
irsend [options] DIRECTIVE REMOTE CODE [CODE...] DESCRIPTION
Asks the lircd daemon to send one or more CIR (Consumer Infra-Red) commands. This is intended for remote control of electronic devices such as TV boxes, HiFi sets, etc. DIRECTIVE can be: SEND_ONCE - send CODE [CODE ...] once SEND_START - start repeating CODE SEND_STOP - stop repeating CODE LIST - list configured remote items SET_TRANSMITTERS - set transmitters NUM [NUM ...] SIMULATE - simulate IR event REMOTE is the name of a remote, as described in the lircd configuration file. CODE is the name of a remote control key of REMOTE, as it appears in the lircd configuration file. NUM is the transmitter number of the hardware device. For the LIST DIRECTIVE, REMOTE and/or CODE can be empty: LIST "" "" - list all configured remote names LIST REMOTE "" - list all codes of REMOTE LIST REMOTE CODE - list only CODE of REMOTE The SIMULATE command only works if it has been explicitly enabled in lircd. -h --help display usage summary -v --version display version -d --device use given lircd socket [/var/run/lirc/lircd] -a --address=host[:port] connect to lircd at this address -# --count=n send command n times EXAMPLES
irsend LIST DenonTuner "" irsend SEND_ONCE DenonTuner PROG-SCAN irsend SEND_ONCE OnkyoAmpli VOL-UP VOL-UP VOL-UP VOL-UP irsend SEND_START OnkyoAmpli VOL-DOWN ; sleep 3 irsend SEND_STOP OnkyoAmpli VOL-DOWN irsend SET_TRANSMITTERS 1 irsend SET_TRANSMITTERS 1 3 4 irsend SIMULATE "0000000000000476 00 OK TECHNISAT_ST3004S" FILES
/etc/lirc/lircd.conf Default lircd configuration file. It should contain all the remotes, their infra-red codes and the corresponding timing and wave- form details. DIAGNOSTICS
If lircd is not running (or /var/run/lirc/lircd lacks write permissions) irsend aborts with the following diagnostics: "irsend: could not connect to socket" "irsend: Connection refused" (or "Permission denied"). SEE ALSO
The documentation for lirc is maintained as html pages. They are located under html/ in the documentation directory. lircd(8), mode2(1), smode2(1), xmode2(1), irrecord(1), irw(1), http://www.lirc.org. irsend 0.8.7pre1 May 2010 IRSEND(1)
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