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Full Discussion: Fetching columns from .csv file except last column
Top Forums Shell Programming and Scripting Fetching columns from .csv file except last column Post 302866407 by renuk on Tuesday 22nd of October 2013 01:35:43 AM
Old 10-22-2013
Fetching columns from .csv file except last column
Hi,


i have below list of files so i just want the name of the files in one parameter and not the timestamp.
i want only GIDW_Dy_Tm_Seg_Sls_legacy_PL_0_0_ in variable of all files.

Code:
 GIDW_Dy_Tm_Seg_Sls_legacy_PL_0_0_20131001101800.csv
 GIDW_Dly_Sls_legacy_RO_0_0_20131001172001.csv
 GIDW_Dly_Sls_legacy_RO_0_0_20131001170502.csv
 GIDW_Dly_Sls_IT_0_0_20131001142013.csv
 GIDW_Dly_Sls_IT_0_0_20131001120323.csv
 GIDW_Dly_Pmix_PL_0_0_20131001114802.csv
 GIDW_Dly_Pmix_PL_0_0_20131001114301.csv
 GIDW_Dy_Tm_Seg_Sls_legacy_PL_0_0_20131001102800.csv
 GIDW_Dy_Tm_Seg_Sls_PT_0_0_20131001053026.csv
 GIDW_Dy_Tm_Seg_Sls_PT_0_0_20131001054026.csv

thanks in advance!!!
Last edited by Don Cragun; 10-22-2013 at 02:48 AM.. Reason: Add CODE and ICODE tags
 

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LEARN ABOUT DEBIAN

csv2mipe

CSV2MIPE(1)						User Contributed Perl Documentation					       CSV2MIPE(1)

NAME

       csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
	 based on MIPE version v1.1
	 arguments: * tab-delimited file with PCR-level data
		    * tab-delimited file with SNP-level data
		    * tab-delimited file with assay-level data

	 Columns in file with PCR-level data:
	   pcr_id
	   pcr_modified (might be multiple, divided by semi-colon ";")
	   pcr_project (might be multiple, divided by semi-colon ";")
	   pcr_researcher (might be multiple, divided by semi-colon ";")
	   pcr_species
	   source_type
	   source_id
	   design_seq
	   primer1_oligo
	   primer1_seq
	   primer1_tm
	   primer2_oligo
	   primer2_seq
	   primer2_tm
	   design_remark (might be multiple, divided by semi-colon ";")
	   use_seq
	   use_revcomp
	   use_remark (might be multiple, divided by semi-colon ";")
	   pcr_remark (might be multiple, divided by semi-colon ";")

	 Columns in file with SNP-level data:
	   pcr_id
	   snp_id
	   snp_pos
	   snp_amb
	   snp_remark (might be multiple, divided by semi-colon ";")

	 Columns in file with assay-level data:
	   pcr_id
	   snp_id
	   assay_id
	   assay_type
	   assay_enzyme
	   assay_oligo
	   assay_specific
	   assay_tail
	   assay_strand
	   assay_remark (might be multiple, divided by semi-colon ";")

SYNOPSIS

       csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>

ADDITIONAL INFO

       See http://mipe.sourceforge.net

AUTHOR

       Jan Aerts (jan.aerts@bbsrc.ac.uk)

perl v5.14.2							    2005-07-20							       CSV2MIPE(1)
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