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Top Forums Shell Programming and Scripting Using shell script to compare files and retrieve connections Post 302865533 by Sanchari on Friday 18th of October 2013 05:36:31 PM
Old 10-18-2013
Using shell script to compare files and retrieve connections

Hello,
I want to use shell script to generate network files (I tried with python but its taking too long).

I have a list of nodes:
node.txt
Code:

LOC_Os11g37970
LOC_Os01g07760
LOC_Os03g19480
LOC_Os11g45740
LOC_Os06g08290
LOC_Os07g02800

I have an edge-list as well: edge.txt
Code:
Source_node   Destination_node
LOC_Os11g37970   LOC_Os04g47140    
LOC_Os03g19480   LOC_Os02g47060   
LOC_Os07g37454   LOC_Os05g44420   
LOC_Os03g49630   LOC_Os03g19480  
LOC_Os08g02120   LOC_Os01g71220   
LOC_Os04g50860   LOC_Os11g37970  
LOC_Os01g01710   LOC_Os01g07090   
LOC_Os01g56370   LOC_Os02g12080

I want to retrieve all those connections (lines/rows) from the edge-list whose either 'source' or 'destination' matches with those in node.txt

Desired output:
Code:
Source_node   Destination_node
LOC_Os11g37970   LOC_Os04g47140 
LOC_Os04g50860   LOC_Os11g37970 
LOC_Os03g19480   LOC_Os02g47060
LOC_Os03g49630   LOC_Os03g19480  

Thanks.
 

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NETSCRIPT-2.2.conf(5)                                           File Formats Manual                                          NETSCRIPT-2.2.conf(5)

NAME
/etc/netscript/network.conf - interface, firewalling, and QoS configuration file. /etc/netscript/if.conf - interface setup shell script file /etc/netscript/qos.conf - QoS setup shell script file /etc/netscript/ipfilter.conf - IP chains filtering shell script file /etc/netscript/srvfilter.conf - server IP filter shell script file DESCRIPTION
This manpage is a place holder until something better is written when the netscript itself has stopped changing rapidly. Please see the README file in the /etc/netscript directory, and READ the configuration files if you need to change them. Apart from net- work.conf, all of them contain sh (1) shell script functions which are there so that various things can be altered or hooked in at the right place. Network.conf contains the full network setup details, including special interface setup for the likes of ciped/pppd/wanconfig, and is fully commented with examples given. UPGRADE PATH FROM KERNEL 2.2.X The firewall/IP filtering stuff in ipfilter.conf is the part that changed radically with the move to iptables and a far better way of set- ting up the IP filtering rules, however the QoS and interface startup/shutdown in if.conf have changed but are backwards compatible with the old 2.2.x ipchains version of netscript for the interface address configuration settings. You will have to set up the filtering again to use iptables by directly using the iptables commands. Also, the kernel 2.2.x version scripts are set up so that iptables is only run on a 2.4.x kernel, otherwise IP forwarding is disabled if beforehand you set IPFWDING_KERNEL to FILTER_ON in network.conf. This means that when you upgrade a box to a 2.4.x router kernel, you should then be able to reboot it and log into remotely and upgrade netscript to the version that will support 2.4.x. In this situation, if you have set old IPFWDING_KERNEL setting to FILTER_ON beforehand in network.conf, all IP forwarding through the box will also be disabled. This means that you can safely remotely upgrade a firewall. SEE ALSO
netscript(8), ipchains(8), iproute(8), brcfg(8). AUTHOR
This manual page was written by Matthew Grant <grantma@anathoth.gen.nz>, for the Debian GNU/Linux system (but may be used by others). BUGS
The author is lazy. He needs to write btter man pages... November 23, 2000 NETSCRIPT-2.2.conf(5)
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