I use grep -c often, but cannot for the life of me count the number of occurences of a string on the same line (or within a file):
$ cat myfile
hello457903485897hello
34329048hellojsdfkljlaskdjgh182390
$ grep -c
2
$
How do I count the number of occurences of "hello" in myfile (i.e. 3)?... (6 Replies)
I have a sorted file like:
Apple 3
Apple 5
Apple 8
Banana 2
Banana 3
Grape 31
Orange 7
Orange 13
I'd like to search $1 and if $1 is not the same as $1 in the previous row print that row and print the number of times $1 was found.
so the output would look like:
Apple 8 3
Banana... (2 Replies)
Hi,
I have the following text in a file:
ISA*00* *00* *ZZ*ENS_EDI *ZZ*GATE0215 *110106*2244*U*00401*006224402*1*P*>~
GS*HP*ENS_EDI*GATE0215*20110106*2244*6224402*X*004010X091A1~
ST*835*00006~... (2 Replies)
Can anyone help me to count number of occurrence of the strings based on column value. Say i have 300 files with 1000 record length from which i need to count the number of occurrence string which is existing from 213 to 219. Some may be unique and some may be repeated. (8 Replies)
Hi
Im a very inexperienced bioinformatician
I have a large DNA file with about 10000 lines of sequence and need to count the occurrence of TA for each line
for example in the file
TACGCGCGATA
TATATATA
GGCGCGTATA
I would like to get an output like:
2
4
2
I have tried... (3 Replies)
Hi,
I have a text file as shown below. I would like to count the unique number of connections of each person in the first and second column. Third column is the ID numbers of first column persons and fourth column is the ID numbers of second column persons.
susan ali 156 294... (7 Replies)
Based on the forums i have tried with grep command but i am unable to get the required output.
search this value /*------
If that is found then search for temp_vul and print
and also search until /*------- and print new_vul
Input file contains:
... (5 Replies)
I have 500 text files in a folder. The data of the text files are shown below.
USA Germany 23-12
USA Germany 23-12
USA Germany 23-12
France Germany 15-12
France Germany 15-12
France Italy 25-50
China China 30-32
China China 30-32
I would... (1 Reply)
I have some text files in a folder f1 with 10 columns. The first five columns of a file are shown below.
aab abb 263-455 263 455
aab abb 263-455 263 455
aab abb 263-455 263 455
bbb abb 26-455 26 455
bbb abb 26-455 26 455
bbb aka 264-266 264 266
bga bga 230-232 230 ... (10 Replies)
Discussion started by: gomez
10 Replies
LEARN ABOUT XFREE86
zgrep
ZGREP(1) General Commands Manual ZGREP(1)NAME
zgrep - search possibly compressed files for a regular expression
SYNOPSIS
zgrep [ grep_options ] [ -e ] pattern filename...
DESCRIPTION
Zgrep invokes grep on compressed or gzipped files. These grep options will cause zgrep to terminate with an error code:
(-[drRzZ]|--di*|--exc*|--inc*|--rec*|--nu*). All other options specified are passed directly to grep. If no file is specified, then the
standard input is decompressed if necessary and fed to grep. Otherwise the given files are uncompressed if necessary and fed to grep.
If the GREP environment variable is set, zgrep uses it as the grep program to be invoked.
EXIT CODE
2 - An option that is not supported was specified.
AUTHOR
Charles Levert (charles@comm.polymtl.ca)
SEE ALSO grep(1), gzexe(1), gzip(1), zdiff(1), zforce(1), zmore(1), znew(1)ZGREP(1)