Dear Collegues
I have to extract Some pattern from raw text file using perl
The input will be raw text.
Pattern to get - Sequence of Capital Letter Words ( e.g. he is working in Center for Perl Studies. He will come tomorrow...) from thos I have to extract sequences like "Center for Perl... (5 Replies)
Hi,
I have an one-line file consisting of a sequence of 660 letters. I would like to extract 9-letter blocks iteratively:
ASDFGHJKLQWERTYUIOPZXCVBNM
first block: ASDFGHJKL
1nd block: SDFGHJKLQ
What I have so far only gives me the first block, can anyone please explain why?
cat... (7 Replies)
Hi.. I have a seperate chromosome sequences and i wanted to parse some regions of chromosome based on start site and end site.. how can i achieve this?
For Example Chr 1 is in following format
I need regions from 2 - 10 should give me AATTCCAAA
and in a similar way 15- 25 should give... (8 Replies)
Hi
I have an alignment file (.fasta) with ~80 sequences. They look like this-
>JV101.contig00066(+):25302-42404|sequence_index=0|block_index=4|species=JV101|JV101_4_0
GAGGTTAATTATCGATAACGTTTAATTAAAGTGTTTAGGTGTCATAATTT
TAAATGACGATTTCTCATTACCATACACCTAAATTATCATCAATCTGAAT... (2 Replies)
I have fasta files with multiple sequences in each. I need to change the sequence name headers from:
>accD:_59176-60699
ATGGAAAAGTGGAGGATTTATTCGTTTCAGAAGGAGTTCGAACGCA
>atpA_(reverse_strand):_showing_revcomp_of_10525-12048
ATGGTAACCATTCAAGCCGACGAAATTAGTAATCTTATCCGGGAAC... (2 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Hello,
I have 10 fasta files with sequenced reads information with read sizes from 15 - 35 . I have combined the reads and collapsed in to unique reads and filtered for sizes 18 - 26 bp long unique reads. Now i wanted to count each unique read appearance in all the fasta files and make a table... (5 Replies)
Hallo,
I need to extract distinct sequence of letters for example from 136 to 193
Files are quite big, so I would prefer not to use "fold -w1"
Thank you very much
Input file look like this:
1 cttttacctt catgtgtttt tgcagatatt tgttcataat aacatcttct ttttaagtta
61 ttaaaatctt... (4 Replies)
I have to mine the following sequence pattern from a large fasta file namely gene.fasta (contains multiple fasta sequences) along with the flanking sequences of 5 bases at starting position and ending position,
AAGCZ-N16-AAGCZ
Z represents A, C or G (Except T)
N16 represents any of the four... (3 Replies)
Discussion started by: dineshkumarsrk
3 Replies
LEARN ABOUT CENTOS
locale::codes::langvar
Locale::Codes::LangVar(3) User Contributed Perl Documentation Locale::Codes::LangVar(3)NAME
Locale::Codes::LangVar - standard codes for language variation identification
SYNOPSIS
use Locale::Codes::LangVar;
$lvar = code2langvar('acm'); # $lvar gets 'Mesopotamian Arabic'
$code = langvar2code('Mesopotamian Arabic'); # $code gets 'acm'
@codes = all_langvar_codes();
@names = all_langvar_names();
DESCRIPTION
The "Locale::Codes::LangVar" module provides access to standard codes used for identifying language variations, such as those as defined in
the IANA language registry.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
registry codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying language variations. A code set may be specified using either a name, or
a constant that is automatically exported by this module.
For example, the two are equivalent:
$lvar = code2langvar('arevela','alpha');
$lvar = code2langvar('arevela',LOCALE_LANGVAR_ALPHA);
The codesets currently supported are:
alpha
This is the set of alphanumeric codes from the IANA language registry, such as 'arevela' for Eastern Armenian.
This code set is identified with the symbol "LOCALE_LANGVAR_ALPHA".
This is the default code set.
ROUTINES
code2langvar ( CODE [,CODESET] )
langvar2code ( NAME [,CODESET] )
langvar_code2code ( CODE ,CODESET ,CODESET2 )
all_langvar_codes ( [CODESET] )
all_langvar_names ( [CODESET] )
Locale::Codes::LangVar::rename_langvar ( CODE ,NEW_NAME [,CODESET] )
Locale::Codes::LangVar::add_langvar ( CODE ,NAME [,CODESET] )
Locale::Codes::LangVar::delete_langvar ( CODE [,CODESET] )
Locale::Codes::LangVar::add_langvar_alias ( NAME ,NEW_NAME )
Locale::Codes::LangVar::delete_langvar_alias ( NAME )
Locale::Codes::LangVar::rename_langvar_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangVar::add_langvar_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangVar::delete_langvar_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.iana.org/assignments/language-subtag-registry
The IANA language subtag registry.
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.16.3 2013-04-12 Locale::Codes::LangVar(3)