Dear Collegues
I have to extract Some pattern from raw text file using perl
The input will be raw text.
Pattern to get - Sequence of Capital Letter Words ( e.g. he is working in Center for Perl Studies. He will come tomorrow...) from thos I have to extract sequences like "Center for Perl... (5 Replies)
Hi,
I have an one-line file consisting of a sequence of 660 letters. I would like to extract 9-letter blocks iteratively:
ASDFGHJKLQWERTYUIOPZXCVBNM
first block: ASDFGHJKL
1nd block: SDFGHJKLQ
What I have so far only gives me the first block, can anyone please explain why?
cat... (7 Replies)
Hi.. I have a seperate chromosome sequences and i wanted to parse some regions of chromosome based on start site and end site.. how can i achieve this?
For Example Chr 1 is in following format
I need regions from 2 - 10 should give me AATTCCAAA
and in a similar way 15- 25 should give... (8 Replies)
Hi
I have an alignment file (.fasta) with ~80 sequences. They look like this-
>JV101.contig00066(+):25302-42404|sequence_index=0|block_index=4|species=JV101|JV101_4_0
GAGGTTAATTATCGATAACGTTTAATTAAAGTGTTTAGGTGTCATAATTT
TAAATGACGATTTCTCATTACCATACACCTAAATTATCATCAATCTGAAT... (2 Replies)
I have fasta files with multiple sequences in each. I need to change the sequence name headers from:
>accD:_59176-60699
ATGGAAAAGTGGAGGATTTATTCGTTTCAGAAGGAGTTCGAACGCA
>atpA_(reverse_strand):_showing_revcomp_of_10525-12048
ATGGTAACCATTCAAGCCGACGAAATTAGTAATCTTATCCGGGAAC... (2 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Hello,
I have 10 fasta files with sequenced reads information with read sizes from 15 - 35 . I have combined the reads and collapsed in to unique reads and filtered for sizes 18 - 26 bp long unique reads. Now i wanted to count each unique read appearance in all the fasta files and make a table... (5 Replies)
Hallo,
I need to extract distinct sequence of letters for example from 136 to 193
Files are quite big, so I would prefer not to use "fold -w1"
Thank you very much
Input file look like this:
1 cttttacctt catgtgtttt tgcagatatt tgttcataat aacatcttct ttttaagtta
61 ttaaaatctt... (4 Replies)
I have to mine the following sequence pattern from a large fasta file namely gene.fasta (contains multiple fasta sequences) along with the flanking sequences of 5 bases at starting position and ending position,
AAGCZ-N16-AAGCZ
Z represents A, C or G (Except T)
N16 represents any of the four... (3 Replies)
Discussion started by: dineshkumarsrk
3 Replies
LEARN ABOUT DEBIAN
swfextract
swfextract(1) swftools swfextract(1)NAME
swfextract - a tool for extracting data out of swf files.
Synopsis
swfextract [options] [file.swf]
DESCRIPTION
swfextracts allows one to extract swf movieclips and objects out of swf files.
SWF files are animation files which can be displayed in Web Browsers using the Flash Plugin.
OPTIONS -h, --help
Print short help message and exit
-o, --output filename
Write output to file filename
-V, --version
Print version info and exit
-i, --id ids
ids is a range of IDs to extract. E.g. 1-10,14
-j, --jpegs ids
ids is a range of JPEG IDs to extract. E.g. 1-2,3,14-
-p, --pngs ids
ids is a range of PNG IDs to extract. E.g. -10,20-30
-f, --frame frames
frames is a range of frames to extract. E.g. 1-10,20-30,40-
-n, --name name
Set the name of the object to extract to name.
-w, --hollow
Copy empty frames to the output file, too.
-P, --placeobject
Copy original placeobject tag for the given object into the output file (Use with -i). This means that the object is at the same
position in the generated movie as in the original movie.
-j, --jpegs range
Extract jpeg pictures in range
-p, --pngs range
Extract png pictures in range
-m, --mp3
Extract main mp3 stream (There may be substreams in the Movieclips, as well. To extract these, first extract the Movieclips with -i
and then use -m)
AUTHOR
Matthias Kramm <kramm@quiss.org>
swfdump January 2003 swfextract(1)