10-11-2013
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a pipe delimited file I need to add a sequence number to in the third field. The record fields will be variable length, so I have to parse for the second pipe. Another requirement is that the sequence number must be unique to all records in the file and subsequent files created, so the... (5 Replies)
Discussion started by: MrPeabody
5 Replies
2. UNIX for Dummies Questions & Answers
Hi All,
I have a string "TBM630300000000020080506094041000003818".I want to replace the last nine digits with another string stored in a variabe called "count".The variabe is also having nine digits.Could any one please help me on this how to accomplish.I need a detail syntax(not in the... (3 Replies)
Discussion started by: raoscb
3 Replies
3. UNIX for Dummies Questions & Answers
A developer of mine has this requirement - I couldn't tell her quickly how to do it with UNIX commands or a quick script so she's writing a quick program to do it - but that got my curiousity up and thought I'd ask here for advice.
In a text file, there are some records (about half of them)... (4 Replies)
Discussion started by: LisaS
4 Replies
4. Shell Programming and Scripting
have this shl that will FTP a file from the a directory in windows to UNIX, It get the name of the file stored in this variable $UpLoadFileName then put in the local directory LocalDir="${MPATH}/xxxxx/dat_files" that part seems to be working, but then I need to take that file and rename, I am using... (3 Replies)
Discussion started by: rechever
3 Replies
5. Shell Programming and Scripting
How do I add the sequence number to the file? I have a file seperated by commas.
appusage,243,jsdgh,798
appusage,876,0989,900
.
.
appusage,82374,ajfgdh,9284
The output would be as below
1,appusage,243,jsdgh,798
2,appusage,876,0989,900
.
.
100,appusage,876,0989,900 (5 Replies)
Discussion started by: smee
5 Replies
6. UNIX for Dummies Questions & Answers
Hi Everyone,
I am new in the world of UNIX and Shell scripting.
I am working with a sequence file that looks like this:
>contig00001 length=128 numreads=2
aTGTGCTGGgTGGGTGCCTGTTgCCccATGCTCCAGTtCAGGATTtCAGGCAttCTCATG
TCCAGCATTTCTATTTAATCCTGCTGCTGGACTTGGGTGGtCTCAGTCtGGGAAGTGAGC
tGTCTGTG... (8 Replies)
Discussion started by: Fahmida
8 Replies
7. Shell Programming and Scripting
Hi,
I have a string like:
DBMS stats (Number Used | Percentage of total): 10 | 1.00%
I have a sed command to extract numbers from this string:
sed "s///g;s/^$/-1/;"
Output: 10100
However what I want the sed command to return is only the first number(regardless of its size) i.e.... (3 Replies)
Discussion started by: mccartj5
3 Replies
8. Shell Programming and Scripting
I need to extract all sequences of thirteen digits in a file, e.g. 4384976350232, and at the same time not extract sequences with 14 or more digits.
How do I do that using sed, awk or something built into bash? (8 Replies)
Discussion started by: locoroco
8 Replies
9. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
10. Shell Programming and Scripting
Hi,
I have one file with one column and several hundred entries
File1:
NA1
NA2
NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this
@RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
Discussion started by: nans
7 Replies
LEARN ABOUT DEBIAN
email::received
Email::Received(3pm) User Contributed Perl Documentation Email::Received(3pm)
NAME
Email::Received - Parse an email Received: header
SYNOPSIS
use Email::Received;
for ($mail->header("Received")) {
my $data = parse_received($_);
return "SPAM" if rbl_lookup($data->{ip});
}
DESCRIPTION
This module is a Perl Email Project rewrite of SpamAssassin's email header parser. We did this so that the great work they did in analysing
pretty much every possible Received header format could be used in applications other than SpamAssassin itself.
The module provides one function, "parse_received", which takes a single Received line. It then produces either nothing, if the line is
unparsable, a hash reference like this:
{ reason => "gateway noise" }
if the line should be ignored for some good reason, and one like this:
{ ip => '64.12.136.4', id => '875522', by => 'xxx.com',
helo => 'imo-m01.mx.aol.com' }
if it parsed the message. Possible keys are:
ip rdns helo ident envfrom auth by id
RULE FORMAT
Where SpamAssassin used a big static subroutine full of regular expressions to parse the data, we build up a big subroutine full of regular
expressions dynamically from a set of rules. The rules are stored at the bottom of this module. The basic format for a rule looks like
this:
((var=~)?/REGEXP/)? [ACTION; ]+
The "ACTION" is either "SET variable = $value", "IGNORE "reason"?", "UNPARSABLE" or "DONE".
One control structure is provided, which is basically an "if" statement:
GIVEN (NOT)? /REGEXP/ {
ACTION+
}
EXPORT
parse_received
SEE ALSO
Mail::SpamAssassin::Message::Metadata::Received, from which the rules and some of the IP address matching constants were blatantly stolen.
Thanks, guys, for doing such a comprehensive job!
AUTHOR
simon, <simon@>
COPYRIGHT AND LICENSE
Copyright (C) 2006 by simon
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or,
at your option, any later version of Perl 5 you may have available.
perl v5.10.0 2006-03-24 Email::Received(3pm)