I have a pipe delimited file I need to add a sequence number to in the third field. The record fields will be variable length, so I have to parse for the second pipe. Another requirement is that the sequence number must be unique to all records in the file and subsequent files created, so the... (5 Replies)
Hi All,
I have a string "TBM630300000000020080506094041000003818".I want to replace the last nine digits with another string stored in a variabe called "count".The variabe is also having nine digits.Could any one please help me on this how to accomplish.I need a detail syntax(not in the... (3 Replies)
A developer of mine has this requirement - I couldn't tell her quickly how to do it with UNIX commands or a quick script so she's writing a quick program to do it - but that got my curiousity up and thought I'd ask here for advice.
In a text file, there are some records (about half of them)... (4 Replies)
have this shl that will FTP a file from the a directory in windows to UNIX, It get the name of the file stored in this variable $UpLoadFileName then put in the local directory LocalDir="${MPATH}/xxxxx/dat_files" that part seems to be working, but then I need to take that file and rename, I am using... (3 Replies)
How do I add the sequence number to the file? I have a file seperated by commas.
appusage,243,jsdgh,798
appusage,876,0989,900
.
.
appusage,82374,ajfgdh,9284
The output would be as below
1,appusage,243,jsdgh,798
2,appusage,876,0989,900
.
.
100,appusage,876,0989,900 (5 Replies)
Hi Everyone,
I am new in the world of UNIX and Shell scripting.
I am working with a sequence file that looks like this:
>contig00001 length=128 numreads=2
aTGTGCTGGgTGGGTGCCTGTTgCCccATGCTCCAGTtCAGGATTtCAGGCAttCTCATG
TCCAGCATTTCTATTTAATCCTGCTGCTGGACTTGGGTGGtCTCAGTCtGGGAAGTGAGC
tGTCTGTG... (8 Replies)
Hi,
I have a string like:
DBMS stats (Number Used | Percentage of total): 10 | 1.00%
I have a sed command to extract numbers from this string:
sed "s///g;s/^$/-1/;"
Output: 10100
However what I want the sed command to return is only the first number(regardless of its size) i.e.... (3 Replies)
I need to extract all sequences of thirteen digits in a file, e.g. 4384976350232, and at the same time not extract sequences with 14 or more digits.
How do I do that using sed, awk or something built into bash? (8 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Hi,
I have one file with one column and several hundred entries
File1:
NA1
NA2
NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this
@RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
Discussion started by: nans
7 Replies
LEARN ABOUT OSX
rake
RAKE(1) Ruby Programmers Reference Guide RAKE(1)NAME
rake -- Ruby Make
SYNOPSIS
rake [--f Rakefile] [--version] [-CGNPgnqstv] [-D [PATTERN]] [-E CODE] [-I LIBDIR] [-R RAKELIBDIR] [-T [PATTERN]] [-e CODE] [-p CODE]
[-r MODULE] [--rules] [variable=value] target ...
DESCRIPTION
Rake is a simple ruby(1) build program with capabilities similar to the regular make(1) command.
Rake has the following features:
o Rakefiles (Rake's version of Makefiles) are completely defined in standard Ruby syntax. No XML files to edit. No quirky Makefile syntax
to worry about (is that a tab or a space?).
o Users can specify tasks with prerequisites.
o Rake supports rule patterns to synthesize implicit tasks.
o Flexible FileLists that act like arrays but know about manipulating file names and paths.
o A library of prepackaged tasks to make building rakefiles easier.
OPTIONS --version Display the program version.
-C
--classic-namespace
Put Task and FileTask in the top level namespace
-D [PATTERN]
--describe [PATTERN]
Describe the tasks (matching optional PATTERN), then exit.
-E CODE
--execute-continue CODE
Execute some Ruby code, then continue with normal task processing.
-G
--no-system
--nosystem Use standard project Rakefile search paths, ignore system wide rakefiles.
-I LIBDIR
--libdir LIBDIR Include LIBDIR in the search path for required modules.
-N
--no-search
--nosearch Do not search parent directories for the Rakefile.
-P
--prereqs Display the tasks and dependencies, then exit.
-R RAKELIBDIR
--rakelib RAKELIBDIR
--rakelibdir RAKELIBDIR
Auto-import any .rake files in RAKELIBDIR. (default is rakelib )
-T [PATTERN]
--tasks [PATTERN] Display the tasks (matching optional PATTERN) with descriptions, then exit.
-e CODE
--execute CODE Execute some Ruby code and exit.
-f FILE
--rakefile FILE Use FILE as the rakefile.
-h
--help Prints a summary of options.
-g
--system Using system wide (global) rakefiles (usually ~/.rake/*.rake ).
-n
--dry-run Do a dry run without executing actions.
-p CODE
--execute-print CODE
Execute some Ruby code, print the result, then exit.
-q
--quiet Do not log messages to standard output.
-r MODULE
--require MODULE Require MODULE before executing rakefile.
-s
--silent Like --quiet, but also suppresses the 'in directory' announcement.
-t
--trace Turn on invoke/execute tracing, enable full backtrace.
-v
--verbose Log message to standard output (default).
--rules Trace the rules resolution.
SEE ALSO ruby(1)make(1)
http://rake.rubyforge.org/
REPORTING BUGS
Bugs, features requests and other issues can be logged at <http://onestepback.org/redmine/projects/show/rake>.
You will need an account to before you can post issues. Register at <http://onestepback.org/redmine/account/register>. Or you can send an
email to the author.
AUTHOR
Rake is written by Jim Weirich <jim@weirichhouse.org>
UNIX November 7, 2012 UNIX