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Top Forums UNIX for Dummies Questions & Answers Replace lines of two files by the corresponding line numbers. Post 302860977 by grace_shen on Monday 7th of October 2013 07:20:36 PM
Old 10-07-2013
Replace lines of two files by the corresponding line numbers.

I want to replace lines. The files 1 are (separated by \t)
Code:
Gm01    phytozome9_0    three_prime_UTR 70641   70759   .       -       .       ID=PAC:26323927.three_prime_UTR.1;Parent=PAC:26323927;pacid=26323927
Gm01    phytozome9_0    three_prime_UTR 90230   90692   .       -       .       ID=PAC:26324253.three_prime_UTR.1;Parent=PAC:26324253;pacid=26324253

Files 2 are
Code:
>?_Gm01_70641_70759_-
GTTAGATGAGCTGGAAAGTGTTTCCATTCTGTCAATGACCCTTGCATGGG
ATGAATTTTCCTTCTCTACTTTTCAAGAAGCCCATTATTCGCTTCAAGTT
TCTCTAGACCAGGTGCCTG
>?_Gm01_70206_70267_-
TGTTCATGCTGCCTCTGTAATGGAGCAGGTTAAAGAGTTCCATTAGAAGA
GATGGTTTTGAG


I want output
Code:
>?_Gm01_pacid=26323927
GTTAGATGAGCTGGAAAGTGTTTCCATTCTGTCAATGACCCTTGCATGGG
ATGAATTTTCCTTCTCTACTTTTCAAGAAGCCCATTATTCGCTTCAAGTT
TCTCTAGACCAGGTGCCTG
>?_Gm01_pacid=26324253
TGTTCATGCTGCCTCTGTAATGGAGCAGGTTAAAGAGTTCCATTAGAAGA
GATGGTTTTGAG


Because the file 2 are generated from 1, so the sequence are the same. The first sequence in file 2 is from the first line in file 1, correspondingly.

Thank you.
Moderator's Comments:
Mod Comment Moderators have added CODE tags to several of your previous posts; and you have shown that you know how to do so. Please use CODE tags for all sample input, output, and code samples.

Last edited by Don Cragun; 10-07-2013 at 08:44 PM.. Reason: Add code tags.
 

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Locale::Codes::LangExt(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangExt(3pm)

NAME
Locale::Codes::LangExt - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangExt; $lext = code2langext('acm'); # $lext gets 'Mesopotamian Arabic' $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langext_codes(); @names = all_langext_names(); DESCRIPTION
The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langext('acm','alpha'); $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic. This is the default code set. ROUTINES
code2langext ( CODE [,CODESET] ) langext2code ( NAME [,CODESET] ) langext_code2code ( CODE ,CODESET ,CODESET2 ) all_langext_codes ( [CODESET] ) all_langext_names ( [CODESET] ) Locale::Codes::LangExt::rename_langext ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangExt::add_langext ( CODE ,NAME [,CODESET] ) Locale::Codes::LangExt::delete_langext ( CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_alias ( NAME ,NEW_NAME ) Locale::Codes::LangExt::delete_langext_alias ( NAME ) Locale::Codes::LangExt::rename_langext_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::delete_langext_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2013-11-04 Locale::Codes::LangExt(3pm)
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