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Top Forums Shell Programming and Scripting Extract lines with unique value using a specific column Post 302860639 by sea on Sunday 6th of October 2013 11:14:05 PM
Old 10-07-2013
This should work:
Code:
grep ^#CHROM file
grep chr[23] file

Where file refers to /path/to/file

Last edited by sea; 10-07-2013 at 12:23 AM..
 

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ZGREP(1)                                                      General Commands Manual                                                     ZGREP(1)

NAME
zgrep - search possibly compressed files for a regular expression SYNOPSIS
zgrep [ grep_options ] [ -e ] pattern filename... DESCRIPTION
Zgrep invokes grep on compressed or gzipped files. These grep options will cause zgrep to terminate with an error code: (-[drRzZ]|--di*|--exc*|--inc*|--rec*|--nu*). All other options specified are passed directly to grep. If no file is specified, then the standard input is decompressed if necessary and fed to grep. Otherwise the given files are uncompressed if necessary and fed to grep. If the GREP environment variable is set, zgrep uses it as the grep program to be invoked. EXIT CODE
2 - An option that is not supported was specified. AUTHOR
Charles Levert (charles@comm.polymtl.ca) SEE ALSO
grep(1), gzexe(1), gzip(1), zdiff(1), zforce(1), zmore(1), znew(1) ZGREP(1)
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