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Top Forums Programming Question regarding Bash program Post 302860403 by sea on Saturday 5th of October 2013 11:15:46 PM
Old 10-06-2013
You've passed hardcoded text, rather than the variable $f..
Code:
load /server/John/Docking-Studies/docking-FC996-analog/MR1004/test/Frog-mol-ryan_*/out_Frog-ryan-mol_ligand_*.pdbqt

becomes
Code:
load /server/John/Docking-Studies/Insilico-mod-FC996/docking-FC996-analog/MR1004/test/$f/out_$f*.pdbqt

Assuming the "out_Frog_ryan_mol" was a typo and should have been "out_Frog_mol_ryan"...

Hope this helps

Last edited by Don Cragun; 10-06-2013 at 03:17 AM.. Reason: Change ICODE tags to CODE tags for pathnames that should not be split into multiple lines
 

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RBASH(1)						      General Commands Manual							  RBASH(1)

NAME
rbash - restricted bash, see bash(1) RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow- ing are disallowed or not performed: o changing directories with cd o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV o specifying command names containing / o specifying a file name containing a / as an argument to the . builtin command o specifying a filename containing a slash as an argument to the -p option to the hash builtin command o importing function definitions from the shell environment at startup o parsing the value of SHELLOPTS from the shell environment at startup o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators o using the exec builtin command to replace the shell with another command o adding or deleting builtin commands with the -f and -d options to the enable builtin command o using the enable builtin command to enable disabled shell builtins o specifying the -p option to the command builtin command o turning off restricted mode with set +r or set +o restricted. These restrictions are enforced after any startup files are read. When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script. SEE ALSO
bash(1) GNU Bash-4.0 2004 Apr 20 RBASH(1)
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