Thanks for all help. I don't want to be annoying. Now It seems is runnig the script
in the way you said me, but when I run this:
Then, when you say "Just extract the required data from the _variable_ "new_binary" using standard simple Python methods", which is the variable that contains the "binary"
block? is block_one or bin_var?
Hi all,
Does anybody know or guide me on how to remove the first N bytes and the last N bytes from a binary file? Is there any AWK or SED or any command that I can use to achieve this?
Your help is greatly appreciated!!
Best Regards,
Naveen. (1 Reply)
Hello,
I have come across the necessity for me to deal with binary sequences and I had a few questions.
1- Does any UNIX scripting language provide any tool or command for converting text data to binary sequences? Example of binary sequence: "0x97 0x93 0x85 0x40 0xd5 0xd6 0xd7"
2- If I want... (2 Replies)
Hi,
I have an one-line file consisting of a sequence of 660 letters. I would like to extract 9-letter blocks iteratively:
ASDFGHJKLQWERTYUIOPZXCVBNM
first block: ASDFGHJKL
1nd block: SDFGHJKLQ
What I have so far only gives me the first block, can anyone please explain why?
cat... (7 Replies)
Hi,
This is part of a large text file I need to separate out.
I'd like some help to build a shell script that will extract the text between sets of dashed lines, write that to a new file using the whole or part of the first text string as the new file name, then move on to the next one and... (7 Replies)
The title is clear: why does ext3 allocate 8 blocks for files that are few bytes long?
If I create a file named "test", put a few chars in it, and then I run:
stat test
I get that "Blocks: 8"
I searched in the web and found that ext does that, it allocates 8 blocks even if It doesn't need... (4 Replies)
Hello guys. I really hope someone will help me with this one..
So, I have to write this script who:
- creates a file home/student/vmdisk of 10 mb
- formats that file to ext3
- mounts that partition to /mnt/partition
- creates a file /mnt/partition/data. In this file, there will... (1 Reply)
Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
... (2 Replies)
I have a fastq file from small RNA sequencing with sequence lengths between 15 - 30. I wanted to filter sequence lengths between 21-25 and write to another fastq file. how can i do that? (4 Replies)
I have a text file, input.fasta contains some protein sequences. input.fasta is shown below.
>P02649
MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQT
LSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA
RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY... (8 Replies)
I sat down yesterday to write this script and have just realised that my methodology is broken........
In essense I have.....
----------------------------------------------------------------- (This line really is in the file)
Service ID: 12345 ... (7 Replies)
Discussion started by: Bashingaway
7 Replies
LEARN ABOUT DEBIAN
gchem3d
GCHEM3D(1) gnome-chemistry-utils GCHEM3D(1)NAME
gchem3d - a small chemical viewer application
SYNOPSIS
gchem3d [OPTION(S)...] [FILE...]
DESCRIPTION
gchem3d is a small chemical viewer application, which can show several chemical file formats.
OPTIONS
The following options are accepted:
-b COLOR, --bgcolor=COLOR
Use the given color as background color. COLOR can be one of "black" (default), "white", "#rrggbb" (don't forget to escape the "#"
character in the shell).
-d MODEL, --display3d=MODEL
Choose how molecules are displayed. MODEL can be one of "BallnStick" (default), "SpaceFill".
-?, --help
Show application help options.
--help-all, --help-*
Print all or just a group of help options. These options are not documented here. Instead see gtk-options(7) and gnome-options(7).
-v, --version
Print gchem3d version information.
SEE ALSO gnome-options(7), gtk-options(7)AUTHORS
Jean Brefort <jean.brefort@normalesup.org>
Program author.
Daniel Leidert <daniel.leidert@wgdd.de>
Manpage author.
COPYRIGHT
Copyright (C) 2002-2007 Jean Brefort
Copyright (C) 2004-2007 Daniel Leidert
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 or any
later version published by the Free Software Foundation.
gcu 0.12 $Date: 2009-03-19 10:53:47 +0100 (jeu. 19 mars 2009) $ GCHEM3D(1)