Sponsored Content
Top Forums Shell Programming and Scripting Extract sequences of bytes from binary for differents blocks Post 302843573 by Ophiuchus on Wednesday 14th of August 2013 01:46:42 AM
Old 08-14-2013
Thanks wisecraker.

Do you know some of python and maybe you can show me an example of how to extract those byte sequences using this language.

Thanks in advance.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Remove first N bytes and last N bytes from a binary file on AIX.

Hi all, Does anybody know or guide me on how to remove the first N bytes and the last N bytes from a binary file? Is there any AWK or SED or any command that I can use to achieve this? Your help is greatly appreciated!! Best Regards, Naveen. (1 Reply)
Discussion started by: naveendronavall
1 Replies

2. UNIX for Advanced & Expert Users

Deal with binary sequences

Hello, I have come across the necessity for me to deal with binary sequences and I had a few questions. 1- Does any UNIX scripting language provide any tool or command for converting text data to binary sequences? Example of binary sequence: "0x97 0x93 0x85 0x40 0xd5 0xd6 0xd7" 2- If I want... (2 Replies)
Discussion started by: Indalecio
2 Replies

3. Shell Programming and Scripting

Extract sequence blocks

Hi, I have an one-line file consisting of a sequence of 660 letters. I would like to extract 9-letter blocks iteratively: ASDFGHJKLQWERTYUIOPZXCVBNM first block: ASDFGHJKL 1nd block: SDFGHJKLQ What I have so far only gives me the first block, can anyone please explain why? cat... (7 Replies)
Discussion started by: solli
7 Replies

4. Shell Programming and Scripting

extract blocks of text from a file

Hi, This is part of a large text file I need to separate out. I'd like some help to build a shell script that will extract the text between sets of dashed lines, write that to a new file using the whole or part of the first text string as the new file name, then move on to the next one and... (7 Replies)
Discussion started by: cajunfries
7 Replies

5. Linux

Why does ext3 allocate 8 blocks for files that are few bytes long

The title is clear: why does ext3 allocate 8 blocks for files that are few bytes long? If I create a file named "test", put a few chars in it, and then I run: stat test I get that "Blocks: 8" I searched in the web and found that ext does that, it allocates 8 blocks even if It doesn't need... (4 Replies)
Discussion started by: Tavo
4 Replies

6. UNIX for Dummies Questions & Answers

X bytes of 0, Y bytes of random data, Z bytes of 5, T bytes of 1. ??

Hello guys. I really hope someone will help me with this one.. So, I have to write this script who: - creates a file home/student/vmdisk of 10 mb - formats that file to ext3 - mounts that partition to /mnt/partition - creates a file /mnt/partition/data. In this file, there will... (1 Reply)
Discussion started by: razolo13
1 Replies

7. Shell Programming and Scripting

Extract sequences based on the list

Hi, I have a file with more than 28000 records and it looks like below.. >mm10_refflat_ABCD range=chr1:1234567-2345678 tgtgcacactacacatgactagtacatgactagac....so on >mm10_refflat_BCD range=chr1:3234567-4545678... tgtgcacactacacatgactagtatgtgcacactacacatgactagta . . . . . so on ... (2 Replies)
Discussion started by: Diya123
2 Replies

8. Shell Programming and Scripting

Extract length wise sequences from fastq file

I have a fastq file from small RNA sequencing with sequence lengths between 15 - 30. I wanted to filter sequence lengths between 21-25 and write to another fastq file. how can i do that? (4 Replies)
Discussion started by: empyrean
4 Replies

9. Shell Programming and Scripting

Extract the part of sequences from a file

I have a text file, input.fasta contains some protein sequences. input.fasta is shown below. >P02649 MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQT LSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY... (8 Replies)
Discussion started by: rahim42
8 Replies

10. Shell Programming and Scripting

Blocks of text in a file - extract when matches...

I sat down yesterday to write this script and have just realised that my methodology is broken........ In essense I have..... ----------------------------------------------------------------- (This line really is in the file) Service ID: 12345 ... (7 Replies)
Discussion started by: Bashingaway
7 Replies
PYTHON(1)						    BSD General Commands Manual 						 PYTHON(1)

NAME
python, pythonw -- an interpreted, interactive, object-oriented programming language SYNOPSIS
python ... pythonw ... DESCRIPTION
To support multiple versions, the programs named python and pythonw now just select the real version of Python to run, depending on various settings. (As of Python 2.5, python and pythonw are interchangeable; both execute Python in the context of an application bundle, which means they have access to the Graphical User Interface; thus both can, when properly programmed, display windows, dialogs, etc.) The current supported versions are 2.6 and 2.7, with the default being 2.6. Use % man python2.6 % man python2.7 % man pythonw2.6 % man pythonw2.7 to see the man page for a specific version. Without a version specified, % man pydoc and the like, will show the man page for the (unmodified) default version of Python (2.6). To see the man page for a specific version, use, for example, % man pydoc2.7 CHANGING THE DEFAULT PYTHON
Using % defaults write com.apple.versioner.python Version 2.7 will make version 2.7 the user default when running the both the python and pythonw commands (versioner is the internal name of the version- selection software used). To set a system-wide default, replace 'com.apple.versioner.python' with '/Library/Preferences/com.apple.versioner.python' (admin privileges will be required). The environment variable VERSIONER_PYTHON_VERSION can also be used to set the python and pythonw version: % export VERSIONER_PYTHON_VERSION=2.7 # Bourne-like shells or % setenv VERSIONER_PYTHON_VERSION 2.7 # C-like shells % python ... This environment variable takes precedence over the preference file settings. 64-BIT SUPPORT Versions 2.6 and 2.7 support 64-bit execution (which is on by default). Like the version of Python, the python command can select between 32 and 64-bit execution (when both are available). Use: % defaults write com.apple.versioner.python Prefer-32-Bit -bool yes to make 32-bit execution the user default (using '/Library/Preferences/com.apple.versioner.python' will set the system-wide default). The environment variable VERSIONER_PYTHON_PREFER_32_BIT can also be used (has precedence over the preference file): % export VERSIONER_PYTHON_PREFER_32_BIT=yes # Bourne-like shells or % setenv VERSIONER_PYTHON_PREFER_32_BIT yes # C-like shells Again, the preference setting and environmental variable applies to both python and pythonw. USING A SPECIFIC VERSION
Rather than using the python command, one can use a specific version directly. For example, running python2.7 from the command line will run the 2.7 version of Python, independent of what the default version of Python is. One can use a specific version of Python on the #! line of a script, but that may have portability and future compatibility issues. Note that the preference files and environment variable that apply to the python command, do not apply when running a specific version of Python. In particular, running python2.6 will always default to 64-bit execution (unless one uses the arch(1) command to specifically select a 32-bit architecture). SEE ALSO
python2.6(1), python2.7(1), pythonw2.6(1), pythonw2.7(1), arch(1) BSD
Aug 10, 2008 BSD
All times are GMT -4. The time now is 04:00 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy