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Top Forums Shell Programming and Scripting How to extract data from XML file using shell scripting? Post 302843137 by Jotne on Monday 12th of August 2013 07:23:56 AM
Old 08-12-2013
Please use code tags
Give an example on what output you like to have

Lik this?
Code:
awk '{gsub(/<[^>]*>/, " ");$1=$1}1' complex.xml
PROT001 Human cytoplasmic Ensembl ENSG00000105829 UNIPROT Q12345 PROT002 Human nuclear Ensembl ENSG00000105333 UNIPROT Q14789



EDIT: Some change
Code:
awk '{gsub(/<[^>]*>/, " ");$1=$1;gsub(/PROT[0-9]/,"\n&")}1' complex.xml

PROT001 Human cytoplasmic Ensembl ENSG00000105829 UNIPROT Q12345
PROT002 Human nuclear Ensembl ENSG00000105333 UNIPROT Q14789


Last edited by Jotne; 08-12-2013 at 08:37 AM..
 

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Dumper(3)						User Contributed Perl Documentation						 Dumper(3)

NAME
XML::Dumper - Perl module for dumping Perl objects from/to XML SYNOPSIS
# Convert Perl code to XML use XML::Dumper; my $dump = new XML::Dumper; $data = [ { first => 'Jonathan', last => 'Eisenzopf', email => 'eisen@pobox.com' }, { first => 'Larry', last => 'Wall', email => 'larry@wall.org' } ]; $xml = $dump->pl2xml($perl); # Convert XML to Perl code use XML::Dumper; my $dump = new XML::Dumper; # some XML my $xml = <<XML; <perldata> <scalar>foo</scalar> </perldata> XML # load Perl data structure from dumped XML $data = $dump->xml2pl($Tree); DESCRIPTION
XML::Dumper dumps Perl data to a structured XML format. XML::Dumper can also read XML data that was previously dumped by the module and convert it back to Perl. This is done via the following 2 methods: XML::Dumper::pl2xml XML::Dumper::xml2pl AUTHOR
Jonathan Eisenzopf <eisen@pobox.com> CREDITS
Chris Thorman <ct@ignitiondesign.com> L.M.Orchard <deus_x@pobox.com> DeWitt Clinton <dewitt@eziba.com> SEE ALSO
perl(1), XML::Parser(3). perl v5.8.0 1999-06-20 Dumper(3)
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