08-05-2013
Hi Don,
I am expecting the output file might be around 250kb to 300kb. All the sequences will have one header line starting with >sp.... The sequence line will have 60 letters each line. The change might happen anywhere not restricted to first line. The new record will start in new line with >sp and the end of the sequence will have *.
Thanks Kaavya
---------- Post updated at 03:35 PM ---------- Previous update was at 03:35 PM ----------
Hi Don,
The position count should start after the header line
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LEARN ABOUT MOJAVE
replace
REPLACE(1) MySQL Database System REPLACE(1)
NAME
replace - a string-replacement utility
SYNOPSIS
replace arguments
DESCRIPTION
The replace utility program changes strings in place in files or on the standard input.
Note
The replace utility is deprecated as of MySQL 5.7.18 and is removed in MySQL 8.0.
Invoke replace in one of the following ways:
shell> replace from to [from to] ... -- file_name [file_name] ...
shell> replace from to [from to] ... < file_name
from represents a string to look for and to represents its replacement. There can be one or more pairs of strings.
Use the -- option to indicate where the string-replacement list ends and the file names begin. In this case, any file named on the command
line is modified in place, so you may want to make a copy of the original before converting it. replace prints a message indicating which
of the input files it actually modifies.
If the -- option is not given, replace reads the standard input and writes to the standard output.
replace uses a finite state machine to match longer strings first. It can be used to swap strings. For example, the following command swaps
a and b in the given files, file1 and file2:
shell> replace a b b a -- file1 file2 ...
replace supports the following options.
o -?, -I
Display a help message and exit.
o -#debug_options
Enable debugging.
o -s
Silent mode. Print less information what the program does.
o -v
Verbose mode. Print more information about what the program does.
o -V
Display version information and exit.
COPYRIGHT
Copyright (C) 1997, 2018, Oracle and/or its affiliates. All rights reserved.
This documentation is free software; you can redistribute it and/or modify it only under the terms of the GNU General Public License as
published by the Free Software Foundation; version 2 of the License.
This documentation is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with the program; if not, write to the Free Software Foundation,
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA or see http://www.gnu.org/licenses/.
SEE ALSO
For more information, please refer to the MySQL Reference Manual, which may already be installed locally and which is also available online
at http://dev.mysql.com/doc/.
AUTHOR
Oracle Corporation (http://dev.mysql.com/).
MySQL 5.7 06/07/2018 REPLACE(1)