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Top Forums Shell Programming and Scripting Split column using awk in a text file Post 302811155 by Jotne on Thursday 23rd of May 2013 06:44:25 AM
Old 05-23-2013
Code:
awk '{n=split ($8,TMP,";"); $8=""; for (i=1; i<=n; i++) if (match (TMP[i], /^DP=|^MQ=|^SNPEFF/)) {sub (/^.*=/,"",TMP[i]); $8=$8 ($8?"\t":"") TMP[i]}}1' FS="\t"

 

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