The output is a really, really large txt file. (I've attached a really small example)
That line of code was written by another bioinformaticist who is more familiar with the file types than I am. He gave it to me to run in the terminal (which worked), but when I tried to use it in a bash script, it hasn't prevailed. I'm currently getting support from him. In conclusion, I don't know I lot of what that code does. I put it out here on the forum to see if it was a quick syntax fix, since I'm not real familiar with bash. Thanks for all your help!
Edit: I mean I know what it produces, but I don't know exactly how it produces.
#!/usr/bin/perl
open (DATA, file.txt);
@array = <DATA>;
close (DATA);
open (DATA, ">$file.txt");
for (@array) {
s/text/replace text/;
push(@contents,$_);
}
seek(DATA, 0, 0);
print DATA (@contents);
close(DATA);
could someone please explain how this works. i've been... (3 Replies)
i am having a weird error on mac os x running some shell scripts. i am a complete newbie at this and this question concerns 2 scripts. one of which a friend of mine wrote (videochecker.sh) a couple weeks ago and it's been running fine on another machine.
then last week i wrote capture.sh and it... (2 Replies)
so in unix this command works works and shows me a list of directories
find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt
but when i try running a perl script to run this command
my $query = 'find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt';... (2 Replies)
Hello.
I would like to ask your help regarding the cp command. We are using a cp command to create a back-up copy of our file but to no avail. It's just not working. We already checked the file and directory permissions and all seems correct.
We have a script (ftp.script) which calls on... (1 Reply)
The following command works perfectly in Terminal, but not in Applescript. (Returns "unknown token" error for square brackets.)
(new to site. sorry.)
I have an Applescript that is designed to find and remove any square-bracketed text, including the square brackets.
I ran the following code from... (1 Reply)
Hi everyone
I have a problem with my script
If I try directly this command
/usr/bin/nice -n 19 mysqldump -u root --password="******" wiki_schneider -c | nice -n 19 gzip -9 > /point_de_montage/$(date '+%Y%m%d')-wiki-db.sql.gz
It works
But if I simply add this command in a script and... (8 Replies)
In the below perl executes if one file is processed perfect. However, when multiple files are processed in batch which is preferred I get the below error that I can not seem to fix it as the '' necessary for the command to execute, but seem to only work for one -arg option. Thank you :).
... (2 Replies)
I have a file with two line, one is header, the other actual value:
TYPCD|ETID2|ETID|LEG ID|PTYP|PTYP SUB|TRD STATUS|CXL REASON|CACT|CACTNM|ENCD|ENC
D NM|TRDR|ASDT|TRDT|MTDT|STDT|LS|SECID|SECID TYP|SECNM|PAR|STCC|MARKET PRICE|DIS
MARKET PRICE|MARKET PRICE CURRENCY|SRC OF SETTLEMENT... (2 Replies)
I wish to replace "\\n" with a single white space.
The below does the job on command-line:
$ echo '/fin/app/scripts\\n/fin/app/01/sql' | sed -e 's#\\\\n# #g';
/fin/app/scripts /fin/app/01/sql
However, when i have the same code to a shell script it is not able to get me the same output:... (8 Replies)
Discussion started by: mohtashims
8 Replies
LEARN ABOUT OSX
script
SCRIPT(1) BSD General Commands Manual SCRIPT(1)NAME
script -- make typescript of terminal session
SYNOPSIS
script [-akq] [-t time] [file [command ...]]
DESCRIPTION
The script utility makes a typescript of everything printed on your terminal. It is useful for students who need a hardcopy record of an
interactive session as proof of an assignment, as the typescript file can be printed out later with lpr(1).
If the argument file is given, script saves all dialogue in file. If no file name is given, the typescript is saved in the file typescript.
If the argument command is given, script will run the specified command with an optional argument vector instead of an interactive shell.
The following options are available:
-a Append the output to file or typescript, retaining the prior contents.
-k Log keys sent to program as well as output.
-q Run in quiet mode, omit the start and stop status messages.
-t time
Specify time interval between flushing script output file. A value of 0 causes script to flush for every character I/O event. The
default interval is 30 seconds.
The script ends when the forked shell (or command) exits (a control-D to exit the Bourne shell (sh(1)), and exit, logout or control-D (if
ignoreeof is not set) for the C-shell, csh(1)).
Certain interactive commands, such as vi(1), create garbage in the typescript file. The script utility works best with commands that do not
manipulate the screen. The results are meant to emulate a hardcopy terminal, not an addressable one.
ENVIRONMENT
The following environment variable is utilized by script:
SHELL If the variable SHELL exists, the shell forked by script will be that shell. If SHELL is not set, the Bourne shell is assumed. (Most
shells set this variable automatically).
SEE ALSO csh(1) (for the history mechanism).
HISTORY
The script command appeared in 3.0BSD.
BUGS
The script utility places everything in the log file, including linefeeds and backspaces. This is not what the naive user expects.
It is not possible to specify a command without also naming the script file because of argument parsing compatibility issues.
When running in -k mode, echo cancelling is far from ideal. The slave terminal mode is checked for ECHO mode to check when to avoid manual
echo logging. This does not work when in a raw mode where the program being run is doing manual echo.
BSD January 22, 2004 BSD