I want a shell script which extract data from a log file which contains date and time-wise data and i need the data for a perticular interval of time...what can i do??? (3 Replies)
Hi, all.
I need to convert a file tab delimited/variable length file in AIX to a fixed lenght file delimited by spaces. This is the input file:
10200002<tab>US$ COM<tab>16/12/2008<tab>2,3775<tab>2,3783
19300978<tab>EURO<tab>16/12/2008<tab>3,28523<tab>3,28657
And this is the expected... (2 Replies)
Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
... (2 Replies)
Hi gurus,
I am trying to figure out how to extract substring from file line (all lines in file), as specified position and specified legth.
Example input (file lines)
dhaskjdsa dsadhkjsa dhsakjdsad hsadkjh
dsahjdksahdsad sahkjd sahdkjsahd sajkdh adhjsak
I want to extract substring on... (5 Replies)
Hello to all,
I would like to search sequences of bytes inside big binary file.
The bin file contains blocks of information, each block begins is estructured as follow:
1- Each block begins with the hex 32 (1 byte) and ends with FF. After the FF of the last block, it follows 33.
2- Next... (59 Replies)
I have a text file, input.fasta contains some protein sequences. input.fasta is shown below.
>P02649
MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQT
LSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA
RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY... (8 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Hi All,
hope you all are doing well!
I kindly ask you for shell scripting help, here is the description:
I have huge number of files shown below on date wise, which contains different strings(numbers you can say) including 505001 and 602001.
... (14 Replies)
I have this file:
>ID1
AA
>ID2
TTTTTT
>ID-3
AAAAAAAAA
>ID4
TTTTTTGGAGATCAGTAGCAGATGACAG-GGGGG-TGCACCCC
Add I am trying to use this script to output sequences longer than 15 characters:
sed -r '/^>/N;{/^.{,15}$/d}'
The desire output would be this:
>ID4... (8 Replies)
I could calculate the length of entire fasta sequences by following command,
awk '/^>/{if (l!="") print l; print; l=0; next}{l+=length($0)}END{print l}' unique.fasta
But, I need to calculate the length of a particular fasta sequence specified/listed in another txt file. The results to to be... (14 Replies)
Discussion started by: dineshkumarsrk
14 Replies
LEARN ABOUT DEBIAN
castor_limits
LCG_LIMITS(4) File Formats LCG_LIMITS(4)NAME
Castor_limits - LCG internal limits
SYNOPSIS
#include <Castor_limits.h>
DESCRIPTION
The Castor_limits.h header file contains all the common limits that all LCG subpackages have to respect.
These are:
CA_MAXACLENTRIES
maximum number of ACL entries for a file/dir
Default value: 300
CA_MAXCLASNAMELEN
maximum length for a fileclass name
Default value: 15
CA_MAXCOMMENTLEN
maximum length for user comments in metadata
Default value: 255
CA_MAXDENFIELDS
maximum number of density values in devinfo
Default value: 8
CA_MAXDENLEN
maximum length for a alphanumeric density
Default value: 8
CA_MAXDGNLEN
maximum length for a device group name
Default value: 6
CA_MAXDPMTOKENLEN
maximum length for a Disk Pool Manager token
Default value: 36
CA_MAXDVNLEN
maximum length for a device name
Default value: 63
CA_MAXDVTLEN
maximum length for a device type
Default value: 8
CA_MAXFIDLEN
maximum length for a fid (DSN)
Default value: 17
CA_MAXFSEQLEN
maximum length for a fseq string
Default value: 14
CA_MAXGID
maximum value for gid
Default value: 0x7FFFFFFF
CA_MAXGRPNAMELEN
maximum length for a group name
Default value: 2
CA_MAXGUIDLEN
maximum length for a guid
Default value: 36
CA_MAXHOSTNAMELEN
maximum length for a hostname
Default value: 63
CA_MAXLBLTYPLEN
maximum length for a label type
Default value: 3
CA_MAXLINELEN
maximum length for a line in a log
Default value: 1023
CA_MAXMANUFLEN
maximum length for a cartridge manufacturer
Default value: 12
CA_MAXMLLEN
maximum length for a cartridge media_letter
Default value: 1
CA_MAXMODELLEN
maximum length for a cartridge model
Default value: 6
CA_MAXNAMELEN
maximum length for a pathname component
Default value: 255
CA_MAXNBDRIVES
maximum number of tape drives per server
Default value: 32
CA_MAXPATHLEN
maximum length for a pathname
Default value: 1023
CA_MAXPOLICYLEN
maximum length for a policy name
Default value: 15
CA_MAXPOOLNAMELEN
maximum length for a pool name
Default value: 15
CA_MAXPROTOLEN
maximum length for a protocol name
Default value: 7
CA_MAXRBTNAMELEN
maximum length for a robot name
Default value: 17
CA_MAXRECFMLEN
maximum length for a record format
Default value: 3
CA_MAXREGEXPLEN
maximum length for a regular expression
Default value: 63
CA_MAXSFNLEN
maximum length for a replica
Default value: 1103
CA_MAXSHORTHOSTLEN
maximum length for a hostname without domain
Default value: 10
CA_MAXSNLEN
maximum length for a cartridge serial nb
Default value: 24
CA_MAXSTGRIDLEN
maximum length for a stager full request id
(must be >= nb digits in
CA_MAXSTGREQID + CA_MAXHOSTNAMELEN + 8)
Default value: 77
CA_MAXSTGREQID
maximum value for a stager request id
Default value: 999999
CA_MAXUID
maximum value for uid
Default value: 0x7FFFFFFF
CA_MAXSYMLINKS
maximum number of symbolic links
Default value: 5
CA_MAXTAGLEN
maximum length for a volume tag
Default value: 255
CA_MAXTAPELIBLEN
maximum length for a tape library name
Default value: 8
CA_MAXUNMLEN
maximum length for a drive name
Default value: 8
CA_MAXUSRNAMELEN
maximum length for a login name
Default value: 14
CA_MAXVIDLEN
maximum length for a VID
Default value: 6
CA_MAXVSNLEN
maximum length for a VSN
Default value: 6
AUTHOR
LCG Grid Deployment Team
LCG $Date: 2007/02/03 11:16:45 $ LCG_LIMITS(4)