I have an xml file:
<AutoData xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<Table1>
<Data1 10 </Data1>
<Data2 20 </Data2>
<Data3 40 </Data3>
<Table1>
</AutoData>
and I have to remove the portion xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" only.
I tried using sed... (10 Replies)
I have a file called config.xml, it's a simple xml file, and I need use sed/awk to erase some lines.
<machine xsi:type="unix-machineType">
<name>server1</name>
<node-manager>
<name>server1</name>
<listen-address>server1</listen-address>
</node-manager>
... (3 Replies)
Hi
I'm new in the Shell world, and I've been trying the whole day to get my script to work.
I'm under Ubuntu 10.04.
Let me explain:
I want to list all the files matching some regex in a directory, and then make some some string replacement on the name of the files, and then a cat on the... (2 Replies)
We have 2 XML file 1. ORIGINAL.xml file and 2. ATTRIBUTE.xml files, In the ORIGINAL.xml we need some modification as <resourceCode>431048</resourceCode>under <item type="Manufactured"> tag - we need to grab the 431048 value from tag and pass it to database table in unix shell script to find the... (0 Replies)
Hi Anybody can help me to make a script that replace string "Su saldo es" with "Your balance" in XML block if it start with Text Id=98 and Text Id= 12 only sample of part of file below
<Text Id="98">
<Language id="1">Su saldo es $mainAccountBalance1Tiene ademas $dedicatedAccount1Balance1... (13 Replies)
Hi,
Need to replace an XML tag name contents, please provide any suggestions.
Scenario is :
<abc_def>Value_some_content</abc_def>
Expected output :
<abc:def>Value_some_content</abc:def>
We have many tag with different names & contents in a file or a string.
Please help on the... (3 Replies)
I've got two different files and want to compare them.
File 1 :
HTML Code:
<response ticketId="944" type="getQueryResults"><status>COMPLETE</status><description>Query results fetched successfully</description><recordSet totalCount="1" type="sms_records"><record... (1 Reply)
Hi ,
I have a below xml:
<ns:Body>
<ns:result>
<Date Month="June" Day="Monday:/>
</ns:result>
</ns:Body>
i have a lookup abc.txtt text file with below details
Month June July August
Day Monday Tuesday Wednesday
I need a output xml with below tags
<ns:Body>
<ns:result>... (2 Replies)
I'm searching for the names of a TV show in the XML file I've attached at the end of this post. What I'm trying to do now is pull out/list the data from each of the <SeriesName> tags throughout the document. Currently, I'm only able to get data the first instance of that XML field using the... (9 Replies)
Discussion started by: hungryd
9 Replies
LEARN ABOUT DEBIAN
bio::treeio::svggraph
Bio::TreeIO::svggraph(3pm) User Contributed Perl Documentation Bio::TreeIO::svggraph(3pm)NAME
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
SYNOPSIS
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
DESCRIPTION
This outputs a tree as an SVG graphic using the SVG::Graph API
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Brian OConnor
Email brian.oconnor-at-excite.com
CONTRIBUTORS
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
write_tree
Title : write_tree
Usage : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args : Bio::Tree::TreeI object
decorateRoot
Title : _decorateRoot
Usage : internal methods
Function:
Example :
Returns :
Args :
next_tree
Title : next_tree
Usage :
Function: Sorry not possible with this format
Returns : none
Args : none
perl v5.14.2 2012-03-02 Bio::TreeIO::svggraph(3pm)