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Full Discussion: Reference of hash (Perl)
Top Forums Shell Programming and Scripting Reference of hash (Perl) Post 302759241 by askari on Tuesday 22nd of January 2013 01:31:02 AM
Old 01-22-2013
Reference of hash (Perl)

Hi Perl users,

Could somebody help me to find the solution of my problem below.
Here is my data:
Code:
__DATA__
===================================================
NameOfipaddress                       ippair_1
propertiesx                           y
propertiesy                           x
ipAddress_1                           192.168.200.1
ipAddress_2                           192.168.200.2 
===================================================
NameOfipaddress                       ippair_2
propertiesx                           y
propertiesy                           x
ipAddress_1                           192.168.200.3
ipAddress_2                           192.168.200.4

Here is the expected result of the code:
Code:
__EXPECTED_RESULT__
FIRST_IP_PAIR
NameOfipaddress : ippair_1       
ipAddress_1     : 192.168.200.1  
ipAddress_2     : 192.168.200.2 

SECOND_IP_PAIR
NameOfipaddress : ippair_2
ipAddress_1     : 192.168.200.3
ipAddress_2     : 192.168.200.4

Here is my code and the unexpected result:

Code:
LINE:while (my $line = <FH>){
         chomp ($line);
         if ($line =~ m/^(NameOfipaddress)\s*(.*)/){
           push @{$datalog{'IP'}{$1}}, $2;
           next;
         }
         if ($line =~ m/^(ipAddress_1)\s*(.*)/){
           push @{$datalog{'IP'}{$1}}, $2;
           next;
         }
         if ($line =~ m/^(ipAddress_2)\s*(.*)/){
           push @{$datalog{'IP'}{$1}}, $2;
           redo LINE if ($line =~ m/^(NameOfipaddress)\s*(.*)/);
         }
     }
     
foreach my $key (sort keys %{$datalog{'IP'}}){
   print "$key: @{$datalog{'IP'}{$key}}";
   print "\n";
}     

__UNEXPECTED_RESULT(my code result)__
NameOfipaddress : ippair_1       ippair_2
ipAddress_1     : 192.168.200.1  192.168.200.3
ipAddress_2     : 192.168.200.2  192.168.200.4

 

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RE-PCR(1)						      General Commands Manual							 RE-PCR(1)

NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...] re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...] re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]] re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...] DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per- forming STS and primer searches. OPTIONS
-p=hash-file Perform primer lookup using hash-file -P=hash-file Perform primer lookup using hash-file -s=hash-file Perform STS lookup using hash-file -S=hash-file Perform STS lookup using hash-file -n=mism Set max allowed mismatches per primer for lookup -g=gaps Set max allowed indels per primer for lookup -m=margin Set variability for STS size for lookup -l Use presize alignments (only if gaps>0) -G Print alignments in comments -d=min-max Set default STS size -r=+|- Enable/disable reverse STS lookup -O=+|- Enable/disable syscall optimisation -C=batchcnt Set number of STSes per batch -o=outfile Set output file name -q Quiet (no progress indicator) EXAMPLE
famap -tN -b genome.famap org/chr_*.fa fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200 See famap(1) and fahash(1) SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt bioperl(1), e-pcr(1), famap(1) and fahash(1) AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. April 2008 RE-PCR(1)
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