How to Sort files based on predefined values.?
Normally Sorting happens for the alphabetic or numberic orders..
Is there any way to sort a fields based on the Field values..?
Field10 has :
one
two
three
five
four
six
ten
seven
eight
nine.
in predefined order { one, two, three,... (2 Replies)
hey gurus,
my-build1-abc
my-build10-abc
my-build2-abc
my-build22-abc
my-build3-abc
basically i want to numerically sort the entire lines based on the build number. I dont zero pad the numbers because thats "how it is" ;-)
sort -n won't work because it starts from the beginning.
... (10 Replies)
I'm trying to find the longest word in /usr/share/dict/words
The first thing I can think of is to sort the content by length then it would be easy to find out, but then i realize theres no option of sort to sort by length.
Could you guys please give me some help?:confused: (7 Replies)
I'm not familiar with find.
If i use find in a certain directory i want it to show based on hierarchy.
find . type d
fol1
fol1/subfol1
fol1/subfol1/subfol1
fol2
fol2/subfol2
i want it to show like this
fol1/subfol1/subfol1
fol1/subfol1
fol1
fol2/subfol2
fol2
do i need to use... (5 Replies)
Hello,
I have parsed an xml file using perl to get the hash values and the output looks like this
$VAR1 = {
'RT' => {
'List' => {
'String' => ... (1 Reply)
Hi,
I have an hashes of hash, where hash is dynamic, it can be n number of hash. i need to compare data_count values of all .
my %result (
$abc => {
'data_count' => '10',
'ID' => 'ABC122',
}
$def => {
'data_count' => '20',
'ID' => 'defASe',
... (1 Reply)
Hi,
I have a hash with unique keys associated with some data.
my %FINALcontigs = (
'mira_rep_c765:119reads**', 'ctctactggaagactgac',
'mira_rep_c7454:54reads**', 'atggatactgcgctgttgctaactactgga',
'mira_rep_c6803:12reads**', 'atcgactggatgcagggttgtggtttcta',
... (2 Replies)
Good day, I am a newbie here and thanks for accepting me
I have a task to modify input data where my input data looks like
123|34567|CHINE
1|23|INDIA
34512|21|USA
104|901|INDIASee that my input has two columns with different character length but max length is 5 and minimum length is 0 which... (1 Reply)
Hi All,
I have a file which is like below. I need to read all the patterns that starts with P and then replace the 9 digit values to 8 digit values (remove leading integer). Can you please help
Example : ( Please look below File)
File :
P,1
M1,... (7 Replies)
Discussion started by: arunkumar_mca
7 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)