Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Help in awk/bash
Top Forums Shell Programming and Scripting Help in awk/bash Post 302752123 by Don Cragun on Saturday 5th of January 2013 04:45:29 PM
Old 01-05-2013
Quote:
Originally Posted by RudiC
As much as I want to help, I am sorry I have to say I can't. Thank you for the effort explaining your input in detail, but post #4 does not relate to post #1 by no means. E.g. group No. 10 being centered at 052 here and 051 there, having 31 branches here and 30 there, groups showing up here not showing up there and vice versa, and, groups in file2 not being represented in file 1.
On top, I still can't see what pattern to fill in (see my post #2), where to get it, based on what rule, even if I take file g.txt to be a distilled version of file1 and file2.
It would be helpful if you post a minimum number of input files (e.g. atoms.txt and g.txt) with interrelating data, an output file and a set of understandable rules on how to get one into the other.
You said you had two two files: atom.txt and g.txt. I am assuming that atom.txt is in the same format as 11.txt in your last thread with the same title as this thread. You have not given us anything that includes even a single complete line (after the header line) from the file g.txt. And, you have not shown us what you want to appear in G10.txt, and any other G*.txt file that we can match against what you have shown us from atom.txt.

With the data you gave us in message #4 in this thread, the First file gives us an indication of what might appear in g.txt for groups 0 through 5, but none of them are listed in g.txt in message $1 nor in Second file in message #4 in this thread.

If you don't give us coherent sample data so we can put together with sample output that matches the sample data you give us, it is EXTREMELY hard to figure out what you want. I think I'm close to figuring out what you want done and expect to post something later this afternoon. But, I have no confidence that it be be at all close to what you want because the specification of what you want is so vague. And, you haven't given us sample input and output that we can use to determine if a possible solution we might develop does what you want done.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

BASH with AWK

Hello, I have a file.txt with 20000 lines and 2 columns each which consists of current_filename and new_filename . I want to create a script to find files in a directory with current_filename and move it to new folder with new_filename. Could you please help me how to do that?? ... (2 Replies)
Discussion started by: narasimhulu
2 Replies

2. Shell Programming and Scripting

Is there any better way for sorting in bash/awk

Hi, I have a file which is:- 1 6 4 8 2 3 2 1 9 3 2 1 3 3 5 6 3 1 4 9 7 8 2 3 I would like to sort from field $2 to field $6 for each of the line to:- 1 2 3 4 6 8 2 1 1 2 3 9 3 1 3 3 5 6 4 2 3 7 8 9 I came across this Arrays on example 26-6. But it is much complicated. I am... (7 Replies)
Discussion started by: ahjiefreak
7 Replies

3. Shell Programming and Scripting

awk bash help

Hi, I'm trying to read a file containing lines with spaces in them. The inputfile looks like this ------------------------------ Command1 arg1 arg2 Command2 arg5 arg6 arg7 ------------------------------- The shell code looks like this... lines=`awk '{ print }' inputfile` ... (2 Replies)
Discussion started by: a-gopal
2 Replies

4. Shell Programming and Scripting

scripting help with bash and awk

I'm trying to reformat some tide information into a useable format and failing. Input file is.... 4452 CHENNAI (MADRAS) 13°06'N, 80°18'E India East Coast 01 June 2009 UT(GMT) Data Area 3. Indian Ocean (northern part) and Red Sea to Singapore 01/06/2009 00:00 0.7 m 00:20 0.7 m 00:40... (3 Replies)
Discussion started by: garethsays
3 Replies

5. UNIX for Dummies Questions & Answers

Help with BASH/AWK queries ....

Hi Everyone, I have an input file in the following format: score.file1.txt contig00045 length=566 numreads=19 1047 0.0 contig00055 length=524 numreads=7 793 0.0 contig00052 length=535 numreads=10 607 e-176 contig00072 length=472 numreads=46 571 e-165... (8 Replies)
Discussion started by: Fahmida
8 Replies

6. Shell Programming and Scripting

AWK/Bash script

I would like to write a script to extend this command to a general case: BEGIN {s_0=0;n_0=0}{n_0++;s_0+=($51-$1)^2}END {print sqrt(s_0/n_0)} i.e. so that BEGIN {s_0=0;n_0=0}{n_0++;s_0+=($51-$1)^2}END {print sqrt(s_0/n_0)} BEGIN {s_1=0;n_1=0}{n_1++;s_1+=($51-$2)^2}END {print... (3 Replies)
Discussion started by: chrisjorg
3 Replies

7. UNIX for Dummies Questions & Answers

Help in awk/bash

Hi, I am also a newbie in awk and trying to find solution of my problem. I have one reference file 1.txt with 2 columns and I want to search other 10 files (a.txt, b.txt......h.txt each with 5 columns) corresponding to the values of 2nd column from 1.txt. If the value from 2nd column from 1.txt... (0 Replies)
Discussion started by: bioinfo
0 Replies

8. Shell Programming and Scripting

Help in awk/bash

Hi, I am also a newbie in awk and trying to find solution of my problem. I have one reference file 1.txt with 2 columns and I want to search other 10 files (a.txt, b.txt......h.txt each with 5 columns) corresponding to the values of 2nd column from 1.txt. If the value from 2nd column from 1.txt... (33 Replies)
Discussion started by: bioinfo
33 Replies

9. Shell Programming and Scripting

Returning a value from awk to bash

Hi I am a newbie starting bash and I have a simple need to return the result of an operation from awk to bash. basically I want to use awk to tell me if "#" exists in a string, and then back in bash, i want to do an IF statement on this return in order to do other things. In my bash shell I... (2 Replies)
Discussion started by: oahmad
2 Replies

10. UNIX for Dummies Questions & Answers

New problem with awk using bash

Hi! I have a new problem with awk, this time I think is because I'm using it in bash and I don't know how to put the valor of the variable in awk. Here is the code: #!/bin/bash for i in 1 2 3 4 5 do a=$i b=$ awk '$1>=a&&$1<=b {print $1,$2,$3}'>asdf test... (3 Replies)
Discussion started by: florpi
3 Replies

LEARN ABOUT X11R4

libbash

LIBBASH(7)							  libbash Manual							LIBBASH(7)

NAME

     libbash -- A bash shared libraries package.

DESCRIPTION

     libbash  is  a package that enables bash dynamic-like shared libraries. Actually its a tool for managing bash scripts whose functions you may
     want to load and use in scripts of your own.

     It contains a 'dynamic loader' for the shared libraries ( ldbash(1)), a configuration tool (ldbashconfig(8)), and some libraries.

     Using ldbash(1) you are able to load loadable bash libraries, such as getopts(1) and hashstash(1).  A bash shared library that can be  loaded
     using
     ldbash(1) must answer 4 requirments:

     1.     It must be installed in $LIBBASH_PREFIX/lib/bash (default is /usr/lib/bash).

     2.     It must contain a line that begins with '#EXPORT='.  That line will contain (after the '=') a list of functions that the library
	    exports.  I.e. all the function that will be usable after loading that library will be listed in that line.

     3.     It must contain a line that begins with '#REQUIRE='.  That line will contain (after the '=') a list of bash libraries that are
	    required for our library.  I.e. every bash library that is in use in our bash library must be listed there.

     4.     The library must be listed (For more information, see ldbashconfig(8)).

   Basic guidelines for writing library of your own:
     1.     Be aware, that your library will be actually sourced. So, basically, it should contain (i.e define) only functions.

     2.     Try to declare all variables intended for internal use as local.

     3.     Global variables and functions that are intended for internal use (i.e are not defined in '#EXPORT=') should begin with:
		  __<library_name>_
	    For example, internal function myfoosort of hashstash library should be named as
		  __hashstash_myfoosort
	    This helps to avoid conflicts in global name space when using libraries that come from different vendors.

     4.     See html manual for full version of this guide.

AUTHORS

     Hai Zaar <haizaar@haizaar.com>
     Gil Ran <ril@ran4.net>

SEE ALSO

     ldbash(1), ldbashconfig(8), getopts(1), hashstash(1) colors(1) messages(1) urlcoding(1) locks(1)

Linux								       Epoch								     Linux
All times are GMT -4. The time now is 03:06 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy