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Full Discussion: Help in awk/bash
Top Forums Shell Programming and Scripting Help in awk/bash Post 302750511 by bioinfo on Tuesday 1st of January 2013 03:25:34 PM
Old 01-01-2013
Thanks a lot Don Cragun and Corona688. I edited script in vi and its working. Yippie Smilie

I have one more query. I am using the following tro.txt as my input file for further program:

Code:
Following entry (2659) comes from 265920.000 truncated:
ATOM      1  N   SER A   1     117.041 155.383 146.906  1.00  0.00           N  
ATOM      2  CA  SER A   1     115.956 155.933 147.729  1.00  0.00           C  
ATOM      3  C   SER A   1     116.331 155.850 149.194  1.00  0.00           C  
TER
ENDMDL
Following entry (2703) comes from 270330.000 rounded:
ATOM      1  N   SER A   1     122.255 148.746 136.780  1.00  0.00           N  
ATOM      2  CA  SER A   1     122.237 147.748 137.846  1.00  0.00           C  
ATOM      3  C   SER A   1     121.916 148.457 139.169  1.00  0.00           C  
TER
ENDMDL
Following entry (2703) comes from 270360.000 rounded:
..........................................................................
..........................................................................

I wish to delete all following lines in this file:

Following entry (2659) comes from 265920.000 truncated:
Following entry (2703) comes from 270330.000 rounded:
Following entry (2703) comes from 270360.000 rounded:
..........................................................................
..........................................................................

Required output:

Code:
ATOM      1  N   SER A   1     117.041 155.383 146.906  1.00  0.00           N  
ATOM      2  CA  SER A   1     115.956 155.933 147.729  1.00  0.00           C  
ATOM      3  C   SER A   1     116.331 155.850 149.194  1.00  0.00           C  
TER
ENDMDL
ATOM      1  N   SER A   1     122.255 148.746 136.780  1.00  0.00           N  
ATOM      2  CA  SER A   1     122.237 147.748 137.846  1.00  0.00           C  
ATOM      3  C   SER A   1     121.916 148.457 139.169  1.00  0.00           C  
TER
ENDML

Please guide.
Thanks.

Last edited by Scrutinizer; 01-04-2013 at 12:38 AM.. Reason: quote tags -> code tags
 

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ISPRINT(3)						   BSD Library Functions Manual 						ISPRINT(3)

NAME
isprint -- printing character test (space character inclusive) LIBRARY
Standard C Library (libc, -lc) SYNOPSIS
#include <ctype.h> int isprint(int c); DESCRIPTION
The isprint() function tests for any printing character, including space (' '). The value of the argument must be representable as an unsigned char or the value of EOF. In the ASCII character set, this includes the following characters (with their numeric values shown in octal): 040 sp 041 ``!'' 042 ``"'' 043 ``#'' 044 ``$'' 045 ``%'' 046 ``&'' 047 ``''' 050 ``('' 051 ``)'' 052 ``*'' 053 ``+'' 054 ``,'' 055 ``-'' 056 ``.'' 057 ``/'' 060 ``0'' 061 ``1'' 062 ``2'' 063 ``3'' 064 ``4'' 065 ``5'' 066 ``6'' 067 ``7'' 070 ``8'' 071 ``9'' 072 ``:'' 073 ``;'' 074 ``<'' 075 ``='' 076 ``>'' 077 ``?'' 100 ``@'' 101 ``A'' 102 ``B'' 103 ``C'' 104 ``D'' 105 ``E'' 106 ``F'' 107 ``G'' 110 ``H'' 111 ``I'' 112 ``J'' 113 ``K'' 114 ``L'' 115 ``M'' 116 ``N'' 117 ``O'' 120 ``P'' 121 ``Q'' 122 ``R'' 123 ``S'' 124 ``T'' 125 ``U'' 126 ``V'' 127 ``W'' 130 ``X'' 131 ``Y'' 132 ``Z'' 133 ``['' 134 ``'' 135 ``]'' 136 ``^'' 137 ``_'' 140 ```'' 141 ``a'' 142 ``b'' 143 ``c'' 144 ``d'' 145 ``e'' 146 ``f'' 147 ``g'' 150 ``h'' 151 ``i'' 152 ``j'' 153 ``k'' 154 ``l'' 155 ``m'' 156 ``n'' 157 ``o'' 160 ``p'' 161 ``q'' 162 ``r'' 163 ``s'' 164 ``t'' 165 ``u'' 166 ``v'' 167 ``w'' 170 ``x'' 171 ``y'' 172 ``z'' 173 ``{'' 174 ``|'' 175 ``}'' 176 ``~'' RETURN VALUES
The isprint() function returns zero if the character tests false and returns non-zero if the character tests true. COMPATIBILITY
The 4.4BSD extension of accepting arguments outside of the range of the unsigned char type in locales with large character sets is considered obsolete and may not be supported in future releases. The iswprint() function should be used instead. SEE ALSO
ctype(3), iswprint(3), ascii(7) STANDARDS
The isprint() function conforms to ISO/IEC 9899:1990 (``ISO C90''). BSD
July 17, 2005 BSD
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