Help with awk Matching columns from two files Post: 302741903

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I know I'm not the first one asking this but my code still does not work: File 1: gi|1283| tRNAscan exon 87020 88058 . - . transcript_id "Parent=tRNA-Tyr5.r01"; gi|3283| tRNAscan exon 97020 97058 . + . transcript_id "Parent=tRNA-Tyr6.r01"; gi|4283| rRNAscan exon 197020 197058 . - . transcript_id...

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I am using awk to match columns and output based on those matches. For some reason it is not printing matching columns, am I missing something? Operating system - windows with cygwin. Command that I am using: sed 's/]*,]*/,/g' $tempdir/file1 > $tempdir/file1.$$ && awk -F, 'FNR==NR{f2=$2...

LEARN ABOUT LINUX

xzdiff

XZDIFF(1)							     XZ Utils								 XZDIFF(1)

NAME

       xzcmp, xzdiff, lzcmp, lzdiff - compare compressed files

SYNOPSIS

       xzcmp [cmp_options] file1 [file2]
       xzdiff [diff_options] file1 [file2]
       lzcmp [cmp_options] file1 [file2]
       lzdiff [diff_options] file1 [file2]

DESCRIPTION

       xzcmp  and xzdiff invoke cmp(1) or diff(1) on files compressed with xz(1), lzma(1), gzip(1), or bzip2(1).  All options specified are passed
       directly to cmp(1) or diff(1).  If only one file is specified, then the files compared are file1 (which must have a suffix of  a  supported
       compression format) and file1 from which the compression format suffix has been stripped.  If two files are specified, then they are uncom-
       pressed if necessary and fed to cmp(1) or diff(1).  The exit status from cmp(1) or diff(1) is preserved.

       The names lzcmp and lzdiff are provided for backward compatibility with LZMA Utils.

SEE ALSO

       cmp(1), diff(1), xz(1), gzip(1), bzip2(1), zdiff(1)

BUGS

       Messages from the cmp(1) or diff(1) programs refer to temporary filenames instead of those specified.

Tukaani 							    2010-09-27								 XZDIFF(1)

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