11-26-2012
Help with awk replacing identical columns based on another file
Hello,
I am using Awk in UBUNTU 12.04.
I have a file like following with three fields and 44706 rows.
F1 A A
F2 G G
F3 A T
I have another file like this:
AL_1 F1 A A
AL_2 F1 A T
AL_3 F1 A A
AL_1 F2 G G
AL_2 F2 G A
AL_3 F2 G G
BO_1 F1 A A
BO_2 F1 A T
BO_1 F2 G A
BO_2 F2 G G
CO_1 F1 A T
CO_2 F1 T T
CO_1 F2 G G
CO_2 F2 G A
( I didn't write for F3 anymore but it contains F3 as well)
This sounds a bit complex. What I want to have is like this:
F1 A T
F2 G A
F3 A T
Sorry as this sounds complex. So, what I want to do is to look in the second file for a "F1" whose 3rd and 4th fields are not the same (i.e. A T instead of A A) and replace it in the first file for "F1".
So, for F2, F3 and the rest.
Thank you very much for any help.
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LEARN ABOUT DEBIAN
colors
COLORS(3) libbash colors Library Manual COLORS(3)
NAME
colors -- libbash library for setting tty colors.
SYNOPSIS
colorSet <color>
colorReset
colorPrint [<indent>] <color> <text>
colorPrintN [<indent>] <color> <text>
DESCRIPTION
General
colors is a collection of functions that make it very easy to put colored text on tty.
The function list:
colorSet Sets the color of the prints to the tty to COLOR
colorReset Resets current tty color back to normal
colorPrint Prints TEXT in the color COLOR indented by INDENT (without adding a newline)
colorPrintN The same as colorPrint, but trailing newline is added
Detailed interface description follows.
Available colors:
Green
Red
Yellow
White
The color parameter is non-case-sensitive (i.e. RED, red, ReD, and all the other forms are valid and are the same as Red).
FUNCTIONS DESCRIPTIONS
colorSet <color>
Sets the current printing color to color.
colorReset
Resets current tty color back to normal.
colorPrint [<indent>] <color>
Prints text using the color color indented by indent (without adding a newline).
Parameters:
<indent>
The column to move to before start printing. This parameter is optional. If ommitted - start output from current cursor position.
<color>
The color to use.
<color>
The text to print.
colorPrintN [<indent>] <color>
The same as colorPrint, except a trailing newline is added.
EXAMPLES
Printing a green 'Hello World' with a newline:
Using colorSet:
$ colorSet green
$ echo 'Hello World'
$ colorReset
Using colorPrint:
$ colorPrint 'Hello World'; echo
Using colorPrintN:
$ colorPrintN 'Hello World'
AUTHORS
Hai Zaar <haizaar@haizaar.com>
Gil Ran <gil@ran4.net>
SEE ALSO
ldbash(1), libbash(1)
Linux Epoch Linux