11-19-2012
There seems to be a problem because when I count the number of fields, it gives me 1 field instead of 47. When I check the tail of my dataset, I see there are lines with only the first column.
I want to only keep the SNPs in the first file that exist in the second file.
sorry for asking too many questions.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi all,
in my csv file it'll look like this, and of course it may have more columns
US to UK;abc-hq-jcl;multimedia
UK to CN;def-ny-jkl;standard
DE to DM;abc-ab-klm;critical
FD to YM;la-yr-tym;standard
HY to MC;la-yr-ytm;multimedia
GT to KJ;def-ny-jrt;critical
I would like to group... (4 Replies)
Discussion started by: tententen
4 Replies
2. Shell Programming and Scripting
I need to extract selected lines from a log file, I can use grep to pull one line matching 'x' or matching 'y', how can I run through the log printing both matching lines in order top to bottom.
i.e
line 1 xyz - not needed
line 2 User01 - needed
line 3 123 - not needed
line 4 Info - needed... (2 Replies)
Discussion started by: rosslm
2 Replies
3. Shell Programming and Scripting
Hi Guys,
I have the following problem. I have original file (org.txt) that looks like this
module v_1(.....)
//arbitrary number of text lines
endmodule
module v_2(....)
//arbitrary number of text lines
endmodule
module v_3(...)
//arbitrary number of text lines
endmodule
module... (6 Replies)
Discussion started by: kaaliakahn
6 Replies
4. Shell Programming and Scripting
Hi all,
I have a question for the Gurus. I apologize if this has bee shared before but I couldn't find the link.
I am trying to read parameters from an external parameter file. What I m trying to achieve is read selected lines from an external parameter file into the script. for eg my param... (4 Replies)
Discussion started by: maverick1947
4 Replies
5. Shell Programming and Scripting
Hello,
I use UBUNTU 12.04.
I want to write a short program using awk to select some lines in a file based on a second file.
My first file has this format with about 400,000 lines and 47 fields:
SNP1 1 12.1
SNP2 1 13.2
SNP3 1 45.2
SNP4 1 23.4
My second file has this format:
SNP2
SNP3... (1 Reply)
Discussion started by: Homa
1 Replies
6. Shell Programming and Scripting
I have a file that looks like this:
cat includes
CORP-CRASHTEST-BU
e:\crashplan\
CORP-TEST
/usr/openv/java
/usr/openv/logs
/usr/openv/man
CORP-LABS_TEST
/usr/openv/java
/usr/openv/logs
/usr/openv/man
What I want to do is make three new files with just those selections. So the three... (4 Replies)
Discussion started by: newbie2010
4 Replies
7. Shell Programming and Scripting
Hi,
I need help with this-
input.txt :
L B white
X Y white
A B brown
M Y black
Read this input file and if 3rd column is "white", then add specific lines to another file insert.txt.
If 3rd column is brown, add different set of lines to insert.txt, and so on.
For example, the given... (6 Replies)
Discussion started by: prashob123
6 Replies
8. Shell Programming and Scripting
Hi Guys ,
I have two files say a1 and a2 having following contents
a1
dag
wfd
a2
dag
wfd
chire
hcm
I want to delete only the lines in a2 which are in a1 and final output of a2 should be
a2
chire
hcm (6 Replies)
Discussion started by: Pradeep_1990
6 Replies
9. UNIX for Dummies Questions & Answers
Hi,
I have a requirement where I need to combine two lines in a file based on first character of each line in a file.
Please find the sample content of the file below:
Code:
_______________________
5, jaya, male, 4-5-90, single
smart
6, prakash, male, 5-4-84, married
fair
7, raghavi,... (1 Reply)
Discussion started by: jayaP
1 Replies
10. UNIX for Advanced & Expert Users
Hi,
I have a requirement where I need to combine two lines in a file based on first character of each line in a file.
Please find the sample content of the file below:
Code:
_______________________
5, jaya, male, 4-5-90, single
smart
6, prakash, male, 5-4-84, married
fair
7, raghavi,... (1 Reply)
Discussion started by: jayaP
1 Replies