Sponsored Content
Full Discussion: Merge with common column
Top Forums Shell Programming and Scripting Merge with common column Post 302728479 by Scrutinizer on Thursday 8th of November 2012 12:50:17 AM
Old 11-08-2012
If you are using join then the files need to be in sorted order and the headers would need to be removed... What should the output look like (sample)?


--edit--
Try:
Code:
#!/bin/awk -f
  # store the first file, indexed by col2
  NR==FNR {f1[$1] = $0; next}
  # output only if file1 contains file2's col2  
  $2 in f1{$0=$0 "\t" f1[$2]}
  {print}


Last edited by Scrutinizer; 11-08-2012 at 01:57 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

merge based on common, awk help

All, $ cat x.txt z 11 az x 12 ax y 13 ay $ cat y.txt ay TT ax NN Output required: y 13 ay TT x 12 ax NN (3 Replies)
Discussion started by: jkl_jkl
3 Replies

2. Shell Programming and Scripting

merge rows based on a common column

Hi guys, Please guide me if you have a solution to this problem. I have tried paste -s but it's not giving the desired output. I have a file with the following content- A123 box1 B345 bat2 C431 my_id A123 service C431 box1 A123 my_id I need two different outputs- OUTPUT1 A123... (6 Replies)
Discussion started by: smriti_shridhar
6 Replies

3. Shell Programming and Scripting

"Join" or "Merge" more than 2 files into single output based on common key (column)

Hi All, I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations: 1. I am restrained to 2 input files only. 2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
Discussion started by: Katabatic
1 Replies

4. UNIX for Dummies Questions & Answers

Writing a loop to merge multiple files by common column

I have 100 data files labelled 250.1.txt through 250.100.txt. The second column of the data files partially match (there is about %90 overlap). Each data file has 4 columns. I want the merge all these text files by the matching values in the second column. In the output, the first column should... (1 Reply)
Discussion started by: evelibertine
1 Replies

5. UNIX for Dummies Questions & Answers

Merge rows with common column

Dear all I have big file with two columns A_AA960715 GO:0006952 A_AA960715 GO:0008152 A_AA960715 GO:0016491 A_AA960715 GO:0007165 A_AA960715 GO:0005618 A_AA960716 GO:0006952 A_AA960716 GO:0005618 A_AA960716... (15 Replies)
Discussion started by: AAWT
15 Replies

6. Shell Programming and Scripting

file merge based on common columns

I have two files 1.txt 34, ABC, 7, 8, 0.9 35, CDE, 6.5, -2, 0.01 2.txt 34, ABC, 9, 6, -1.9 35, CDE, 8.5, -2.3, 5.01 So in both files common columns are 1 and 2 so final o/p should look like 34, ABC, 7, 8, 0.9, 9, 6, -1.9 35, CDE, 6.5, -2, 0.01, 8.5, -2.3, 5.01 I tried using... (3 Replies)
Discussion started by: manas_ranjan
3 Replies

7. Shell Programming and Scripting

Count and merge using common column

I have the following records from multiple files. 415 A G 415 A G 415 A T 415 A . 415 A . 421 G A 421 G A,C 421 G A 421 G A 421 G A,C 421 G . 427 A C 427 A ... (3 Replies)
Discussion started by: empyrean
3 Replies

8. Shell Programming and Scripting

Merge files based on both common and uncommon rows

Hi, I have two files A (2190 rows) and file B (1100 rows). I want to merge the contents of two files based on common field, also I need the unmatched rows from file A file A: ABC XYZ PQR file B: >LMN|chr1:11000-12456: >ABC|chr15:176578-187678: >PQR|chr3:14567-15866: output... (3 Replies)
Discussion started by: Diya123
3 Replies

9. Shell Programming and Scripting

Seperated by columns, merge in a file, sort them on common column

Hi All, I have 4 files in below format. I took them as an example. File 1: Cut from position 1-4 then 6-7 then 8-14 then rest left and make them as columns in one new file. Inserting character H to the initial of all line like HCTOT. CTOT 456787897 Low fever CTOR 556712345 High fever... (2 Replies)
Discussion started by: Mannu2525
2 Replies

10. Shell Programming and Scripting

Merge multiple files with common header

Hi all, Say i have multiple files x1 x2 x3 x4, all with common header (date, time, year, age),, How can I merge them to one singe file "X" in shell scripting Thanks for your suggestions. (2 Replies)
Discussion started by: msarguru
2 Replies
COMM(1) 							   User Commands							   COMM(1)

NAME
comm - compare two sorted files line by line SYNOPSIS
comm [OPTION]... FILE1 FILE2 DESCRIPTION
Compare sorted files FILE1 and FILE2 line by line. With no options, produce three-column output. Column one contains lines unique to FILE1, column two contains lines unique to FILE2, and column three contains lines common to both files. -1 suppress column 1 (lines unique to FILE1) -2 suppress column 2 (lines unique to FILE2) -3 suppress column 3 (lines that appear in both files) --check-order check that the input is correctly sorted, even if all input lines are pairable --nocheck-order do not check that the input is correctly sorted --output-delimiter=STR separate columns with STR --help display this help and exit --version output version information and exit Note, comparisons honor the rules specified by 'LC_COLLATE'. EXAMPLES
comm -12 file1 file2 Print only lines present in both file1 and file2. comm -3 file1 file2 Print lines in file1 not in file2, and vice versa. GNU coreutils online help: <http://www.gnu.org/software/coreutils/> Report comm translation bugs to <http://translationproject.org/team/> AUTHOR
Written by Richard M. Stallman and David MacKenzie. COPYRIGHT
Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. SEE ALSO
join(1), uniq(1) The full documentation for comm is maintained as a Texinfo manual. If the info and comm programs are properly installed at your site, the command info coreutils 'comm invocation' should give you access to the complete manual. GNU coreutils 8.22 June 2014 COMM(1)
All times are GMT -4. The time now is 06:13 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy