Dear All,
I have some data file.see below.
--------------ALARM CLEARING FROM SubNetwork=ONRM_RootMo,SubNetwork=AXE,ManagedElement=CGSN--------------
Alarm Record ID: 25196304
Event Time: 2006-08-28 13:41:35
Event Type: ... (1 Reply)
Hi, I have a file with the following data
-0.00000 0.00000 0.00000 F F F
0.00000 0.00000 0.80000 F F F
0.50000 0.50000 0.60000 F F F
0.50000 0.50000 0.20000 F F F
-0.00000 0.00000 0.40000 F F F
I would like to change the last 3 lines from F F F to T T T. I tried looping each line but don't... (5 Replies)
I have a Transaction File coming into the system. In this file, in all records the relevant data is as follows-
Position 1:10 -> Transaction Code
Position 252:255 -> 4 digit business code
Now based on these 2 fields I have to alter value in Transaction code (Position 1:10)... (6 Replies)
Input file
>Read_1
XXXXXXXXXXSDFXXXXXDS (condition 1: After the last "X" per line, if the distance is less than or equal to 3 letter, replace those not "X" letter with "X")
TREXXXXXXXSDFXXXXXDS (condition 2: Before the first "X" per line, if the distance is less than or equal to 3 letter,... (12 Replies)
Origin file has got 180 fields. I have to change olny 12th,18th and 52nd one.
In a file new.txt I've got those changes in 4 fields (first one is index):
I know how to change ONE field with awk array. But my question is: could it be changed more than one field in one single step?
ps: one... (5 Replies)
Hi All,
Please help i have written an ksh script, where i am actually take count of lines in one file and want to update this count to 2nd field of a new file and apend the this into an existing file.
Note the below script is in for loop
-------- I am apending few records in a file... (7 Replies)
Base of last two column i want to change may data
if Last two Column have A and C then Copy Column $4 to Column $3.
Input :-
DD142 0_1 DD142_A DD142_B A B
DD142 1_1 DD142_B DD142_C B C
DD142 2_1 DD142_A DD142_C A C
DD142 3_1 DD142_A A
DD142 3_2 DD142_A A
DD142 4_1 DD142_B B ... (4 Replies)
Hello,
I have this file outputData:
# cat /tmp/outputData
__Capacity^6^NBSC01_Licences^L3_functionality_for_ESB_switch
__Capacity^2100^NBSC01_Licences^Gb_over_IP
__Capacity^1837^NBSC01_Licences^EDGE_BSS_Fnc
__Capacity^1816^NBSC01_Licences^GPRS_CS3_and_CS4... (1 Reply)
Discussion started by: nypreH
1 Replies
LEARN ABOUT DEBIAN
t_coffee
T-COFFEE(1) General Commands Manual T-COFFEE(1)NAME
t-coffee - multiple sequence alignment
SYNOPSIS
t_coffee [options]file
t-coffee aligns multiple DNA or protein sequences.
OPTIONS
A summary of options is included below. For a complete description, see the documentation.
-full_log S [0]
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-seq S [0]
-in S [0] Mlalign_id_pair Mslow_pair
-pdb S [0]
-out_lib W_F [0] no
-lib_only D [0] 0
-outseqweight W_F [0] no
-seq_source S [0] ANY
-cosmetic_penalty D [0] -50
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-usetree R_F [0]
-tree_mode S [0] slow
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [0] clustalw
-infile R_F [0]
-matrix S [0] blosum62mt
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] full50
-dp_mode S [0] cfasta_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-type S [0]
-outorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 60
-maxlen D [0] -1
-weight S [0] default
-seq_weight S [0] t_coffee
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-evaluate_mode S [0] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [60] 60
-prot_min_cov D [0] 0
-pdb_min_sim D [30] 30
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] SIB
-prot_blast_server W_F [0] SIB
-pdb_db W_F [0] nrl3d
-protein_db W_F [0] nr
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-msa_mode S [0] tree
-lalign_n_top D [0] 10
-iterate D [0] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 10
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_thread S [0]
-lib_list S [0]
SEE ALSO clustalw(1), /usr/share/doc/t-coffee/,
http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home
AUTHOR
t-coffee was written by Cedric Notredame <cedric.notredame@europe.com>
This manual page was written by Steffen Moeller <moeller@pzr.uni-rostock.de>, for the Debian project (but may be used by others).
May 13, 2005 T-COFFEE(1)